Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18190 and CSW01_18195 are separated by 94 nucleotides CSW01_18195 and CSW01_18200 are separated by 87 nucleotides
CSW01_18190: CSW01_18190 - exoribonuclease 2, at 746,980 to 749,016
_18190
CSW01_18195: CSW01_18195 - DUF3024 domain-containing protein, at 749,111 to 749,584
_18195
CSW01_18200: CSW01_18200 - ABC transporter substrate-binding protein, at 749,672 to 750,508
_18200
Position (kb) 749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 748.132 kb on + strand, within CSW01_18190 at 748.158 kb on + strand, within CSW01_18190 at 748.193 kb on - strand, within CSW01_18190 at 748.237 kb on + strand, within CSW01_18190 at 748.274 kb on + strand, within CSW01_18190 at 748.289 kb on - strand, within CSW01_18190 at 748.413 kb on + strand, within CSW01_18190 at 748.460 kb on + strand, within CSW01_18190 at 748.475 kb on + strand, within CSW01_18190 at 748.602 kb on - strand, within CSW01_18190 at 748.639 kb on + strand, within CSW01_18190 at 748.647 kb on - strand, within CSW01_18190 at 748.821 kb on - strand at 748.823 kb on + strand at 748.831 kb on - strand at 749.010 kb on + strand at 749.100 kb on - strand at 749.161 kb on - strand, within CSW01_18195 at 749.227 kb on + strand, within CSW01_18195 at 749.249 kb on + strand, within CSW01_18195 at 749.367 kb on - strand, within CSW01_18195 at 749.388 kb on - strand, within CSW01_18195 at 749.401 kb on - strand, within CSW01_18195 at 749.528 kb on + strand, within CSW01_18195 at 749.591 kb on + strand at 749.629 kb on + strand at 749.740 kb on - strand at 749.955 kb on + strand, within CSW01_18200 at 749.955 kb on + strand, within CSW01_18200 at 749.955 kb on + strand, within CSW01_18200 at 749.963 kb on - strand, within CSW01_18200 at 750.006 kb on - strand, within CSW01_18200 at 750.006 kb on - strand, within CSW01_18200 at 750.039 kb on - strand, within CSW01_18200 at 750.039 kb on - strand, within CSW01_18200 at 750.079 kb on - strand, within CSW01_18200 at 750.350 kb on + strand, within CSW01_18200 at 750.418 kb on - strand, within CSW01_18200 at 750.503 kb on - strand at 750.563 kb on - strand at 750.574 kb on + strand at 750.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 748,132 + CSW01_18190 0.57 +1.0 748,158 + CSW01_18190 0.58 -2.7 748,193 - CSW01_18190 0.60 +0.0 748,237 + CSW01_18190 0.62 -0.3 748,274 + CSW01_18190 0.64 -3.7 748,289 - CSW01_18190 0.64 -0.5 748,413 + CSW01_18190 0.70 -0.2 748,460 + CSW01_18190 0.73 -2.5 748,475 + CSW01_18190 0.73 +1.0 748,602 - CSW01_18190 0.80 -1.9 748,639 + CSW01_18190 0.81 -1.1 748,647 - CSW01_18190 0.82 -2.4 748,821 - -1.4 748,823 + +1.1 748,831 - -1.0 749,010 + -2.2 749,100 - +2.5 749,161 - CSW01_18195 0.11 -0.9 749,227 + CSW01_18195 0.24 -0.8 749,249 + CSW01_18195 0.29 -2.2 749,367 - CSW01_18195 0.54 -1.6 749,388 - CSW01_18195 0.58 -0.8 749,401 - CSW01_18195 0.61 +0.0 749,528 + CSW01_18195 0.88 -0.9 749,591 + -1.1 749,629 + +1.1 749,740 - +0.2 749,955 + CSW01_18200 0.34 -0.8 749,955 + CSW01_18200 0.34 +0.9 749,955 + CSW01_18200 0.34 +0.8 749,963 - CSW01_18200 0.35 -0.3 750,006 - CSW01_18200 0.40 -0.9 750,006 - CSW01_18200 0.40 -2.8 750,039 - CSW01_18200 0.44 -1.3 750,039 - CSW01_18200 0.44 +0.4 750,079 - CSW01_18200 0.49 -2.8 750,350 + CSW01_18200 0.81 -0.8 750,418 - CSW01_18200 0.89 +0.8 750,503 - -1.4 750,563 - +0.2 750,574 + +1.0 750,574 + +0.0
Or see this region's nucleotide sequence