Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18180 and CSW01_18185 are separated by 143 nucleotides CSW01_18185 and CSW01_18190 are separated by 313 nucleotides
CSW01_18180: CSW01_18180 - serine protease, at 743,539 to 744,531
_18180
CSW01_18185: CSW01_18185 - DEAD/DEAH box family ATP-dependent RNA helicase, at 744,675 to 746,666
_18185
CSW01_18190: CSW01_18190 - exoribonuclease 2, at 746,980 to 749,016
_18190
Position (kb) 744
745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 743.675 kb on - strand, within CSW01_18180 at 743.683 kb on - strand, within CSW01_18180 at 743.706 kb on + strand, within CSW01_18180 at 743.799 kb on - strand, within CSW01_18180 at 743.882 kb on - strand, within CSW01_18180 at 743.934 kb on - strand, within CSW01_18180 at 743.979 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.994 kb on - strand, within CSW01_18180 at 744.040 kb on + strand, within CSW01_18180 at 744.040 kb on + strand, within CSW01_18180 at 744.048 kb on - strand, within CSW01_18180 at 744.096 kb on - strand, within CSW01_18180 at 744.105 kb on - strand, within CSW01_18180 at 744.123 kb on + strand, within CSW01_18180 at 744.164 kb on + strand, within CSW01_18180 at 744.284 kb on + strand, within CSW01_18180 at 744.284 kb on + strand, within CSW01_18180 at 744.284 kb on - strand, within CSW01_18180 at 744.292 kb on - strand, within CSW01_18180 at 744.292 kb on - strand, within CSW01_18180 at 744.296 kb on + strand, within CSW01_18180 at 744.357 kb on + strand, within CSW01_18180 at 744.718 kb on - strand at 744.719 kb on + strand at 744.737 kb on - strand at 744.875 kb on - strand, within CSW01_18185 at 745.227 kb on - strand, within CSW01_18185 at 745.316 kb on - strand, within CSW01_18185 at 745.756 kb on + strand, within CSW01_18185 at 745.777 kb on - strand, within CSW01_18185 at 745.777 kb on - strand, within CSW01_18185 at 745.979 kb on + strand, within CSW01_18185 at 746.185 kb on - strand, within CSW01_18185 at 746.214 kb on + strand, within CSW01_18185 at 746.280 kb on + strand, within CSW01_18185 at 746.466 kb on - strand, within CSW01_18185 at 746.568 kb on - strand at 747.073 kb on + strand at 747.110 kb on + strand at 747.195 kb on + strand, within CSW01_18190 at 747.211 kb on - strand, within CSW01_18190 at 747.211 kb on - strand, within CSW01_18190 at 747.372 kb on + strand, within CSW01_18190 at 747.524 kb on + strand, within CSW01_18190 at 747.560 kb on - strand, within CSW01_18190
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 743,675 - CSW01_18180 0.14 +2.0 743,683 - CSW01_18180 0.15 -1.4 743,706 + CSW01_18180 0.17 -0.4 743,799 - CSW01_18180 0.26 -1.0 743,882 - CSW01_18180 0.35 -2.1 743,934 - CSW01_18180 0.40 +0.2 743,979 + CSW01_18180 0.44 -1.9 743,986 + CSW01_18180 0.45 -1.3 743,986 + CSW01_18180 0.45 +0.3 743,986 + CSW01_18180 0.45 -0.3 743,994 - CSW01_18180 0.46 +2.5 744,040 + CSW01_18180 0.50 -0.4 744,040 + CSW01_18180 0.50 +0.4 744,048 - CSW01_18180 0.51 -2.2 744,096 - CSW01_18180 0.56 -0.4 744,105 - CSW01_18180 0.57 -0.6 744,123 + CSW01_18180 0.59 -1.4 744,164 + CSW01_18180 0.63 +1.1 744,284 + CSW01_18180 0.75 -3.1 744,284 + CSW01_18180 0.75 -3.2 744,284 - CSW01_18180 0.75 +0.8 744,292 - CSW01_18180 0.76 -2.5 744,292 - CSW01_18180 0.76 -0.2 744,296 + CSW01_18180 0.76 -1.2 744,357 + CSW01_18180 0.82 +1.5 744,718 - -1.7 744,719 + +0.3 744,737 - -1.6 744,875 - CSW01_18185 0.10 -0.7 745,227 - CSW01_18185 0.28 -1.5 745,316 - CSW01_18185 0.32 -2.3 745,756 + CSW01_18185 0.54 +1.0 745,777 - CSW01_18185 0.55 -1.3 745,777 - CSW01_18185 0.55 -2.2 745,979 + CSW01_18185 0.65 -0.4 746,185 - CSW01_18185 0.76 +0.0 746,214 + CSW01_18185 0.77 -1.0 746,280 + CSW01_18185 0.81 -0.6 746,466 - CSW01_18185 0.90 -1.6 746,568 - +0.4 747,073 + -0.6 747,110 + +0.4 747,195 + CSW01_18190 0.11 -1.7 747,211 - CSW01_18190 0.11 -1.6 747,211 - CSW01_18190 0.11 -1.0 747,372 + CSW01_18190 0.19 +0.0 747,524 + CSW01_18190 0.27 -1.2 747,560 - CSW01_18190 0.28 -1.5
Or see this region's nucleotide sequence