Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17630

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17625 and CSW01_17630 are separated by 11 nucleotidesCSW01_17630 and CSW01_17635 are separated by 85 nucleotides CSW01_17625: CSW01_17625 - iron ABC transporter permease, at 620,820 to 622,922 _17625 CSW01_17630: CSW01_17630 - Fe(3+) ions import ATP-binding protein FbpC, at 622,934 to 623,989 _17630 CSW01_17635: CSW01_17635 - class I poly(R)-hydroxyalkanoic acid synthase, at 624,075 to 625,850 _17635 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.982 kb on + strand, within CSW01_17625at 621.999 kb on - strand, within CSW01_17625at 622.103 kb on - strand, within CSW01_17625at 622.195 kb on + strand, within CSW01_17625at 622.205 kb on + strand, within CSW01_17625at 622.420 kb on + strand, within CSW01_17625at 622.610 kb on - strand, within CSW01_17625at 622.634 kb on - strand, within CSW01_17625at 622.685 kb on + strand, within CSW01_17625at 622.763 kb on + strandat 622.770 kb on + strandat 622.788 kb on - strandat 622.788 kb on - strandat 622.788 kb on - strandat 622.788 kb on - strandat 623.093 kb on + strand, within CSW01_17630at 623.133 kb on + strand, within CSW01_17630at 623.180 kb on + strand, within CSW01_17630at 623.188 kb on + strand, within CSW01_17630at 623.190 kb on + strand, within CSW01_17630at 623.196 kb on - strand, within CSW01_17630at 623.256 kb on - strand, within CSW01_17630at 623.262 kb on + strand, within CSW01_17630at 623.324 kb on - strand, within CSW01_17630at 623.364 kb on + strand, within CSW01_17630at 623.394 kb on + strand, within CSW01_17630at 623.577 kb on - strand, within CSW01_17630at 623.610 kb on - strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.646 kb on - strand, within CSW01_17630at 623.658 kb on - strand, within CSW01_17630at 623.748 kb on - strand, within CSW01_17630at 623.877 kb on + strand, within CSW01_17630at 623.896 kb on + strandat 623.904 kb on - strandat 623.911 kb on + strandat 623.920 kb on + strandat 623.928 kb on - strandat 623.937 kb on + strandat 623.945 kb on - strandat 623.987 kb on - strandat 623.987 kb on - strandat 623.996 kb on - strandat 624.056 kb on + strandat 624.099 kb on - strandat 624.121 kb on + strandat 624.124 kb on + strandat 624.124 kb on + strandat 624.126 kb on + strandat 624.126 kb on + strandat 624.126 kb on + strandat 624.172 kb on - strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.227 kb on - strandat 624.227 kb on - strandat 624.234 kb on + strandat 624.281 kb on + strand, within CSW01_17635at 624.325 kb on - strand, within CSW01_17635at 624.343 kb on + strand, within CSW01_17635at 624.343 kb on + strand, within CSW01_17635at 624.351 kb on - strand, within CSW01_17635at 624.351 kb on - strand, within CSW01_17635at 624.361 kb on - strand, within CSW01_17635at 624.361 kb on - strand, within CSW01_17635at 624.475 kb on - strand, within CSW01_17635at 624.496 kb on + strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.654 kb on - strand, within CSW01_17635at 624.698 kb on - strand, within CSW01_17635at 624.712 kb on - strand, within CSW01_17635at 624.917 kb on - strand, within CSW01_17635

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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621,982 + CSW01_17625 0.55 +1.6
621,999 - CSW01_17625 0.56 +0.0
622,103 - CSW01_17625 0.61 +0.5
622,195 + CSW01_17625 0.65 -1.5
622,205 + CSW01_17625 0.66 -0.5
622,420 + CSW01_17625 0.76 +1.0
622,610 - CSW01_17625 0.85 +0.3
622,634 - CSW01_17625 0.86 +0.3
622,685 + CSW01_17625 0.89 -0.4
622,763 + +0.0
622,770 + -1.0
622,788 - +0.4
622,788 - -1.4
622,788 - -2.0
622,788 - +0.0
623,093 + CSW01_17630 0.15 +1.2
623,133 + CSW01_17630 0.19 -1.8
623,180 + CSW01_17630 0.23 -2.0
623,188 + CSW01_17630 0.24 +0.1
623,190 + CSW01_17630 0.24 -1.7
623,196 - CSW01_17630 0.25 -1.9
623,256 - CSW01_17630 0.30 -1.8
623,262 + CSW01_17630 0.31 -1.9
623,324 - CSW01_17630 0.37 -2.5
623,364 + CSW01_17630 0.41 +0.0
623,394 + CSW01_17630 0.44 +0.3
623,577 - CSW01_17630 0.61 -0.3
623,610 - CSW01_17630 0.64 -0.2
623,638 + CSW01_17630 0.67 +0.3
623,638 + CSW01_17630 0.67 -2.2
623,646 - CSW01_17630 0.67 +0.0
623,658 - CSW01_17630 0.69 -3.5
623,748 - CSW01_17630 0.77 -2.1
623,877 + CSW01_17630 0.89 -0.5
623,896 + +0.2
623,904 - -3.1
623,911 + +0.0
623,920 + -3.1
623,928 - +0.7
623,937 + +1.1
623,945 - +0.0
623,987 - -0.2
623,987 - +0.2
623,996 - -3.2
624,056 + +0.8
624,099 - -0.5
624,121 + -0.0
624,124 + -0.8
624,124 + -1.3
624,126 + -1.0
624,126 + -2.0
624,126 + -0.9
624,172 - +0.0
624,182 + -0.6
624,182 + +0.2
624,182 + -2.5
624,182 + -1.6
624,182 + +1.0
624,227 - +0.4
624,227 - -1.7
624,234 + -2.5
624,281 + CSW01_17635 0.12 -0.5
624,325 - CSW01_17635 0.14 -0.7
624,343 + CSW01_17635 0.15 -2.0
624,343 + CSW01_17635 0.15 +0.7
624,351 - CSW01_17635 0.16 +2.0
624,351 - CSW01_17635 0.16 +0.4
624,361 - CSW01_17635 0.16 -2.9
624,361 - CSW01_17635 0.16 -1.3
624,475 - CSW01_17635 0.23 +0.7
624,496 + CSW01_17635 0.24 -1.0
624,504 - CSW01_17635 0.24 -1.2
624,504 - CSW01_17635 0.24 +0.1
624,504 - CSW01_17635 0.24 +0.3
624,504 - CSW01_17635 0.24 +0.0
624,654 - CSW01_17635 0.33 -0.7
624,698 - CSW01_17635 0.35 -0.1
624,712 - CSW01_17635 0.36 +0.3
624,917 - CSW01_17635 0.47 +0.2

Or see this region's nucleotide sequence