Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17620

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17615 and CSW01_17620 are separated by 112 nucleotidesCSW01_17620 and CSW01_17625 are separated by 103 nucleotides CSW01_17615: CSW01_17615 - MFS transporter family glucose-6-phosphate receptor UhpC, at 618,259 to 619,569 _17615 CSW01_17620: CSW01_17620 - iron(III) ABC transporter substrate-binding protein, at 619,682 to 620,716 _17620 CSW01_17625: CSW01_17625 - iron ABC transporter permease, at 620,820 to 622,922 _17625 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1at 618.790 kb on - strand, within CSW01_17615at 618.903 kb on - strand, within CSW01_17615at 618.940 kb on + strand, within CSW01_17615at 618.946 kb on + strand, within CSW01_17615at 618.948 kb on - strand, within CSW01_17615at 618.954 kb on - strand, within CSW01_17615at 618.979 kb on + strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 619.024 kb on + strand, within CSW01_17615at 619.087 kb on + strand, within CSW01_17615at 619.124 kb on + strand, within CSW01_17615at 619.132 kb on - strand, within CSW01_17615at 619.211 kb on - strand, within CSW01_17615at 619.377 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.514 kb on + strandat 619.514 kb on + strandat 619.556 kb on + strandat 619.607 kb on + strandat 619.607 kb on + strandat 619.612 kb on + strandat 619.615 kb on - strandat 619.627 kb on + strandat 619.632 kb on + strandat 619.975 kb on + strand, within CSW01_17620at 620.002 kb on + strand, within CSW01_17620at 620.058 kb on - strand, within CSW01_17620at 620.087 kb on + strand, within CSW01_17620at 620.095 kb on - strand, within CSW01_17620at 620.103 kb on - strand, within CSW01_17620at 620.206 kb on + strand, within CSW01_17620at 620.241 kb on + strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.346 kb on - strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.410 kb on - strand, within CSW01_17620at 620.435 kb on + strand, within CSW01_17620at 620.546 kb on - strand, within CSW01_17620at 620.624 kb on - strandat 620.655 kb on + strandat 620.655 kb on + strandat 620.766 kb on + strandat 620.766 kb on + strandat 620.774 kb on - strandat 620.774 kb on - strandat 620.774 kb on - strandat 620.784 kb on - strandat 620.794 kb on + strandat 620.794 kb on + strandat 620.802 kb on - strandat 620.948 kb on - strandat 621.001 kb on - strandat 621.001 kb on - strandat 621.074 kb on - strand, within CSW01_17625at 621.083 kb on - strand, within CSW01_17625at 621.083 kb on - strand, within CSW01_17625at 621.112 kb on + strand, within CSW01_17625at 621.121 kb on + strand, within CSW01_17625at 621.153 kb on - strand, within CSW01_17625at 621.153 kb on - strand, within CSW01_17625at 621.210 kb on + strand, within CSW01_17625at 621.280 kb on + strand, within CSW01_17625at 621.359 kb on + strand, within CSW01_17625at 621.400 kb on + strand, within CSW01_17625at 621.408 kb on - strand, within CSW01_17625at 621.414 kb on - strand, within CSW01_17625at 621.440 kb on - strand, within CSW01_17625at 621.594 kb on - strand, within CSW01_17625at 621.628 kb on - strand, within CSW01_17625at 621.677 kb on + strand, within CSW01_17625at 621.685 kb on - strand, within CSW01_17625

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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618,790 - CSW01_17615 0.41 +1.1
618,903 - CSW01_17615 0.49 +0.6
618,940 + CSW01_17615 0.52 -1.5
618,946 + CSW01_17615 0.52 -1.0
618,948 - CSW01_17615 0.53 +0.7
618,954 - CSW01_17615 0.53 +0.8
618,979 + CSW01_17615 0.55 -0.4
618,987 - CSW01_17615 0.56 +0.2
618,987 - CSW01_17615 0.56 -0.5
619,024 + CSW01_17615 0.58 +0.8
619,087 + CSW01_17615 0.63 +1.1
619,124 + CSW01_17615 0.66 -0.1
619,132 - CSW01_17615 0.67 -0.1
619,211 - CSW01_17615 0.73 -0.7
619,377 - CSW01_17615 0.85 +1.4
619,431 - CSW01_17615 0.89 -0.5
619,431 - CSW01_17615 0.89 -2.8
619,431 - CSW01_17615 0.89 -3.3
619,431 - CSW01_17615 0.89 -0.4
619,514 + -1.2
619,514 + -1.6
619,556 + +1.1
619,607 + -2.1
619,607 + -0.4
619,612 + -0.2
619,615 - +0.3
619,627 + -2.3
619,632 + -1.6
619,975 + CSW01_17620 0.28 +1.4
620,002 + CSW01_17620 0.31 +1.4
620,058 - CSW01_17620 0.36 -2.3
620,087 + CSW01_17620 0.39 -1.1
620,095 - CSW01_17620 0.40 +0.5
620,103 - CSW01_17620 0.41 +0.2
620,206 + CSW01_17620 0.51 +0.3
620,241 + CSW01_17620 0.54 +0.1
620,336 - CSW01_17620 0.63 -0.6
620,336 - CSW01_17620 0.63 -1.1
620,346 - CSW01_17620 0.64 +0.4
620,379 + CSW01_17620 0.67 +1.5
620,379 + CSW01_17620 0.67 +0.2
620,397 - CSW01_17620 0.69 +1.1
620,397 - CSW01_17620 0.69 +0.4
620,410 - CSW01_17620 0.70 -2.7
620,435 + CSW01_17620 0.73 -1.7
620,546 - CSW01_17620 0.83 +0.2
620,624 - -0.9
620,655 + -0.5
620,655 + -1.9
620,766 + -0.5
620,766 + -0.4
620,774 - -2.9
620,774 - -0.4
620,774 - +0.5
620,784 - +0.2
620,794 + +1.3
620,794 + +0.3
620,802 - +1.3
620,948 - -3.1
621,001 - +0.2
621,001 - +0.9
621,074 - CSW01_17625 0.12 -2.9
621,083 - CSW01_17625 0.13 -1.4
621,083 - CSW01_17625 0.13 -0.7
621,112 + CSW01_17625 0.14 -0.3
621,121 + CSW01_17625 0.14 +0.6
621,153 - CSW01_17625 0.16 -0.2
621,153 - CSW01_17625 0.16 +0.3
621,210 + CSW01_17625 0.19 -0.3
621,280 + CSW01_17625 0.22 +0.5
621,359 + CSW01_17625 0.26 +0.6
621,400 + CSW01_17625 0.28 +1.0
621,408 - CSW01_17625 0.28 -0.8
621,414 - CSW01_17625 0.28 +0.8
621,440 - CSW01_17625 0.29 -1.0
621,594 - CSW01_17625 0.37 -0.2
621,628 - CSW01_17625 0.38 +0.0
621,677 + CSW01_17625 0.41 -1.7
621,685 - CSW01_17625 0.41 +1.1

Or see this region's nucleotide sequence