Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17610

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17600 and CSW01_17605 are separated by 158 nucleotidesCSW01_17605 and CSW01_17610 are separated by 2 nucleotidesCSW01_17610 and CSW01_17615 are separated by 67 nucleotides CSW01_17600: CSW01_17600 - HDIG domain-containing protein, at 614,525 to 615,820 _17600 CSW01_17605: CSW01_17605 - DNA-binding response regulator, at 615,979 to 616,605 _17605 CSW01_17610: CSW01_17610 - signal transduction histidine-protein kinase/phosphatase UhpB, at 616,608 to 618,191 _17610 CSW01_17615: CSW01_17615 - MFS transporter family glucose-6-phosphate receptor UhpC, at 618,259 to 619,569 _17615 Position (kb) 616 617 618 619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 615.611 kb on - strand, within CSW01_17600at 615.666 kb on + strand, within CSW01_17600at 615.714 kb on - strandat 615.800 kb on + strandat 615.808 kb on - strandat 615.808 kb on - strandat 615.853 kb on + strandat 615.861 kb on - strandat 615.861 kb on - strandat 615.875 kb on + strandat 615.893 kb on + strandat 615.997 kb on + strandat 616.028 kb on + strandat 616.038 kb on + strandat 616.038 kb on + strandat 616.061 kb on - strand, within CSW01_17605at 616.095 kb on + strand, within CSW01_17605at 616.105 kb on - strand, within CSW01_17605at 616.268 kb on - strand, within CSW01_17605at 616.424 kb on + strand, within CSW01_17605at 616.483 kb on + strand, within CSW01_17605at 616.535 kb on + strand, within CSW01_17605at 616.535 kb on + strand, within CSW01_17605at 616.568 kb on + strandat 616.573 kb on + strandat 616.643 kb on + strandat 616.651 kb on + strandat 616.654 kb on - strandat 616.659 kb on - strandat 616.731 kb on + strandat 616.731 kb on + strandat 616.731 kb on + strandat 616.739 kb on - strandat 616.809 kb on + strand, within CSW01_17610at 616.826 kb on + strand, within CSW01_17610at 616.851 kb on + strand, within CSW01_17610at 616.856 kb on + strand, within CSW01_17610at 617.054 kb on + strand, within CSW01_17610at 617.065 kb on + strand, within CSW01_17610at 617.073 kb on - strand, within CSW01_17610at 617.142 kb on - strand, within CSW01_17610at 617.211 kb on - strand, within CSW01_17610at 617.211 kb on - strand, within CSW01_17610at 617.314 kb on + strand, within CSW01_17610at 617.314 kb on + strand, within CSW01_17610at 617.337 kb on - strand, within CSW01_17610at 617.393 kb on - strand, within CSW01_17610at 617.459 kb on + strand, within CSW01_17610at 617.511 kb on - strand, within CSW01_17610at 617.624 kb on + strand, within CSW01_17610at 617.770 kb on + strand, within CSW01_17610at 617.770 kb on + strand, within CSW01_17610at 617.778 kb on - strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.830 kb on - strand, within CSW01_17610at 617.830 kb on - strand, within CSW01_17610at 617.832 kb on - strand, within CSW01_17610at 617.875 kb on - strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.899 kb on - strand, within CSW01_17610at 617.901 kb on + strand, within CSW01_17610at 618.022 kb on + strand, within CSW01_17610at 618.071 kb on - strandat 618.277 kb on + strandat 618.309 kb on + strandat 618.366 kb on + strandat 618.426 kb on - strand, within CSW01_17615at 618.462 kb on + strand, within CSW01_17615at 618.470 kb on - strand, within CSW01_17615at 618.473 kb on + strand, within CSW01_17615at 618.473 kb on + strand, within CSW01_17615at 618.479 kb on - strand, within CSW01_17615at 618.491 kb on - strand, within CSW01_17615at 618.554 kb on + strand, within CSW01_17615at 618.602 kb on - strand, within CSW01_17615at 618.790 kb on - strand, within CSW01_17615at 618.903 kb on - strand, within CSW01_17615at 618.940 kb on + strand, within CSW01_17615at 618.946 kb on + strand, within CSW01_17615at 618.948 kb on - strand, within CSW01_17615at 618.954 kb on - strand, within CSW01_17615at 618.979 kb on + strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 619.024 kb on + strand, within CSW01_17615at 619.087 kb on + strand, within CSW01_17615at 619.124 kb on + strand, within CSW01_17615at 619.132 kb on - strand, within CSW01_17615

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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615,611 - CSW01_17600 0.84 -0.2
615,666 + CSW01_17600 0.88 -0.9
615,714 - -1.3
615,800 + +1.3
615,808 - -0.7
615,808 - +0.6
615,853 + -0.0
615,861 - +0.2
615,861 - +0.6
615,875 + -2.5
615,893 + -0.0
615,997 + -1.4
616,028 + +1.4
616,038 + -2.3
616,038 + +0.1
616,061 - CSW01_17605 0.13 +1.5
616,095 + CSW01_17605 0.19 -0.3
616,105 - CSW01_17605 0.20 -1.9
616,268 - CSW01_17605 0.46 -1.5
616,424 + CSW01_17605 0.71 +1.8
616,483 + CSW01_17605 0.80 -0.3
616,535 + CSW01_17605 0.89 -0.9
616,535 + CSW01_17605 0.89 +0.0
616,568 + +0.5
616,573 + -1.6
616,643 + +0.8
616,651 + -0.4
616,654 - +0.2
616,659 - -1.2
616,731 + -1.4
616,731 + +0.6
616,731 + +1.5
616,739 - +0.4
616,809 + CSW01_17610 0.13 +0.2
616,826 + CSW01_17610 0.14 +1.5
616,851 + CSW01_17610 0.15 +0.1
616,856 + CSW01_17610 0.16 -1.3
617,054 + CSW01_17610 0.28 -0.2
617,065 + CSW01_17610 0.29 +1.3
617,073 - CSW01_17610 0.29 -1.4
617,142 - CSW01_17610 0.34 -0.7
617,211 - CSW01_17610 0.38 -0.9
617,211 - CSW01_17610 0.38 +0.0
617,314 + CSW01_17610 0.45 +1.0
617,314 + CSW01_17610 0.45 -0.6
617,337 - CSW01_17610 0.46 +0.3
617,393 - CSW01_17610 0.50 -2.8
617,459 + CSW01_17610 0.54 -0.4
617,511 - CSW01_17610 0.57 -0.2
617,624 + CSW01_17610 0.64 +1.0
617,770 + CSW01_17610 0.73 +0.6
617,770 + CSW01_17610 0.73 +0.8
617,778 - CSW01_17610 0.74 -1.1
617,822 + CSW01_17610 0.77 +1.7
617,822 + CSW01_17610 0.77 +0.8
617,822 + CSW01_17610 0.77 -4.0
617,822 + CSW01_17610 0.77 +0.2
617,830 - CSW01_17610 0.77 -2.0
617,830 - CSW01_17610 0.77 +0.7
617,832 - CSW01_17610 0.77 +0.3
617,875 - CSW01_17610 0.80 +0.6
617,891 + CSW01_17610 0.81 +1.9
617,891 + CSW01_17610 0.81 +2.6
617,891 + CSW01_17610 0.81 -0.8
617,899 - CSW01_17610 0.82 +0.9
617,901 + CSW01_17610 0.82 -1.9
618,022 + CSW01_17610 0.89 +1.6
618,071 - +0.7
618,277 + -0.4
618,309 + +1.4
618,366 + -1.9
618,426 - CSW01_17615 0.13 +0.1
618,462 + CSW01_17615 0.15 +1.2
618,470 - CSW01_17615 0.16 +0.0
618,473 + CSW01_17615 0.16 -1.3
618,473 + CSW01_17615 0.16 -0.4
618,479 - CSW01_17615 0.17 +1.8
618,491 - CSW01_17615 0.18 -2.8
618,554 + CSW01_17615 0.23 -0.4
618,602 - CSW01_17615 0.26 -3.2
618,790 - CSW01_17615 0.41 +1.1
618,903 - CSW01_17615 0.49 +0.6
618,940 + CSW01_17615 0.52 -1.5
618,946 + CSW01_17615 0.52 -1.0
618,948 - CSW01_17615 0.53 +0.7
618,954 - CSW01_17615 0.53 +0.8
618,979 + CSW01_17615 0.55 -0.4
618,987 - CSW01_17615 0.56 +0.2
618,987 - CSW01_17615 0.56 -0.5
619,024 + CSW01_17615 0.58 +0.8
619,087 + CSW01_17615 0.63 +1.1
619,124 + CSW01_17615 0.66 -0.1
619,132 - CSW01_17615 0.67 -0.1

Or see this region's nucleotide sequence