Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17580 and CSW01_17585 are separated by 66 nucleotides CSW01_17585 and CSW01_17590 are separated by 17 nucleotides CSW01_17590 and CSW01_17595 are separated by 11 nucleotides CSW01_17595 and CSW01_17600 are separated by 43 nucleotides
CSW01_17580: CSW01_17580 - periplasmic nitrate reductase subunit alpha, at 610,737 to 613,226
_17580
CSW01_17585: CSW01_17585 - periplasmic nitrate reductase electron transfer subunit, at 613,293 to 613,748
_17585
CSW01_17590: CSW01_17590 - cytochrome C, at 613,766 to 614,341
_17590
CSW01_17595: CSW01_17595 - TIGR02808 family protein, at 614,353 to 614,481
_17595
CSW01_17600: CSW01_17600 - HDIG domain-containing protein, at 614,525 to 615,820
_17600
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.867 kb on + strand, within CSW01_17580 at 612.881 kb on + strand, within CSW01_17580 at 612.881 kb on + strand, within CSW01_17580 at 612.882 kb on - strand, within CSW01_17580 at 612.889 kb on - strand, within CSW01_17580 at 612.889 kb on - strand, within CSW01_17580 at 612.894 kb on - strand, within CSW01_17580 at 612.908 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.947 kb on + strand, within CSW01_17580 at 612.955 kb on - strand, within CSW01_17580 at 612.955 kb on - strand, within CSW01_17580 at 612.955 kb on - strand, within CSW01_17580 at 612.955 kb on - strand, within CSW01_17580 at 612.955 kb on - strand, within CSW01_17580 at 612.973 kb on + strand, within CSW01_17580 at 612.973 kb on + strand, within CSW01_17580 at 612.981 kb on - strand at 613.033 kb on + strand at 613.041 kb on - strand at 613.061 kb on - strand at 613.098 kb on + strand at 613.176 kb on + strand at 613.226 kb on + strand at 613.248 kb on + strand at 613.391 kb on - strand, within CSW01_17585 at 613.611 kb on - strand, within CSW01_17585 at 613.944 kb on + strand, within CSW01_17590 at 613.974 kb on + strand, within CSW01_17590 at 614.045 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.216 kb on - strand, within CSW01_17590 at 614.223 kb on + strand, within CSW01_17590 at 614.226 kb on - strand, within CSW01_17590 at 614.324 kb on + strand at 614.382 kb on + strand, within CSW01_17595 at 614.553 kb on + strand at 614.553 kb on + strand at 614.553 kb on + strand at 614.561 kb on - strand at 614.561 kb on - strand at 614.561 kb on - strand at 614.696 kb on - strand, within CSW01_17600 at 614.881 kb on - strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.945 kb on - strand, within CSW01_17600 at 615.004 kb on + strand, within CSW01_17600 at 615.031 kb on - strand, within CSW01_17600 at 615.135 kb on - strand, within CSW01_17600 at 615.214 kb on + strand, within CSW01_17600 at 615.224 kb on + strand, within CSW01_17600 at 615.248 kb on - strand, within CSW01_17600
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 612,867 + CSW01_17580 0.86 -0.9 612,881 + CSW01_17580 0.86 -2.0 612,881 + CSW01_17580 0.86 +0.5 612,882 - CSW01_17580 0.86 +0.4 612,889 - CSW01_17580 0.86 +0.1 612,889 - CSW01_17580 0.86 +0.7 612,894 - CSW01_17580 0.87 -0.5 612,908 + CSW01_17580 0.87 -2.4 612,947 + CSW01_17580 0.89 -0.0 612,947 + CSW01_17580 0.89 +1.0 612,947 + CSW01_17580 0.89 -1.5 612,947 + CSW01_17580 0.89 +2.4 612,947 + CSW01_17580 0.89 +0.9 612,947 + CSW01_17580 0.89 -0.3 612,955 - CSW01_17580 0.89 -2.6 612,955 - CSW01_17580 0.89 -1.7 612,955 - CSW01_17580 0.89 +0.3 612,955 - CSW01_17580 0.89 +0.9 612,955 - CSW01_17580 0.89 +0.1 612,973 + CSW01_17580 0.90 +0.5 612,973 + CSW01_17580 0.90 +0.4 612,981 - -3.4 613,033 + -1.4 613,041 - +0.6 613,061 - -0.1 613,098 + +0.7 613,176 + -0.3 613,226 + -2.3 613,248 + -2.7 613,391 - CSW01_17585 0.21 +0.1 613,611 - CSW01_17585 0.70 -0.4 613,944 + CSW01_17590 0.31 -0.1 613,974 + CSW01_17590 0.36 -0.4 614,045 + CSW01_17590 0.48 +1.0 614,208 + CSW01_17590 0.77 -1.4 614,208 + CSW01_17590 0.77 -3.1 614,208 + CSW01_17590 0.77 -1.7 614,216 - CSW01_17590 0.78 -0.4 614,223 + CSW01_17590 0.79 +0.6 614,226 - CSW01_17590 0.80 -1.1 614,324 + -3.5 614,382 + CSW01_17595 0.22 -2.4 614,553 + -0.7 614,553 + -0.1 614,553 + -1.0 614,561 - +0.8 614,561 - -0.3 614,561 - +0.9 614,696 - CSW01_17600 0.13 +1.3 614,881 - CSW01_17600 0.27 +1.0 614,929 + CSW01_17600 0.31 -3.2 614,929 + CSW01_17600 0.31 -3.6 614,929 + CSW01_17600 0.31 -1.3 614,937 - CSW01_17600 0.32 +0.7 614,937 - CSW01_17600 0.32 +0.1 614,937 - CSW01_17600 0.32 -3.7 614,937 - CSW01_17600 0.32 +1.0 614,945 - CSW01_17600 0.32 +1.4 615,004 + CSW01_17600 0.37 -0.2 615,031 - CSW01_17600 0.39 +1.0 615,135 - CSW01_17600 0.47 +1.1 615,214 + CSW01_17600 0.53 -1.1 615,224 + CSW01_17600 0.54 +0.4 615,248 - CSW01_17600 0.56 -2.5
Or see this region's nucleotide sequence