Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17545 and CSW01_17550 are separated by 96 nucleotides CSW01_17550 and CSW01_17555 are separated by 239 nucleotides
CSW01_17545: CSW01_17545 - MFS transporter, at 603,632 to 604,927
_17545
CSW01_17550: CSW01_17550 - nuclear transport factor 2 family protein, at 605,024 to 606,040
_17550
CSW01_17555: CSW01_17555 - LacI family transcriptional regulator, at 606,280 to 607,311
_17555
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 604.033 kb on + strand, within CSW01_17545 at 604.039 kb on - strand, within CSW01_17545 at 604.041 kb on - strand, within CSW01_17545 at 604.185 kb on - strand, within CSW01_17545 at 604.202 kb on + strand, within CSW01_17545 at 604.266 kb on - strand, within CSW01_17545 at 604.268 kb on + strand, within CSW01_17545 at 604.276 kb on - strand, within CSW01_17545 at 604.276 kb on - strand, within CSW01_17545 at 604.356 kb on - strand, within CSW01_17545 at 604.566 kb on + strand, within CSW01_17545 at 604.711 kb on - strand, within CSW01_17545 at 604.719 kb on + strand, within CSW01_17545 at 604.761 kb on + strand, within CSW01_17545 at 604.897 kb on + strand at 604.978 kb on + strand at 604.983 kb on + strand at 605.072 kb on - strand at 605.148 kb on + strand, within CSW01_17550 at 605.345 kb on - strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.392 kb on - strand, within CSW01_17550 at 605.423 kb on + strand, within CSW01_17550 at 605.464 kb on + strand, within CSW01_17550 at 605.505 kb on + strand, within CSW01_17550 at 605.513 kb on - strand, within CSW01_17550 at 605.524 kb on - strand, within CSW01_17550 at 605.571 kb on + strand, within CSW01_17550 at 605.610 kb on - strand, within CSW01_17550 at 605.627 kb on + strand, within CSW01_17550 at 605.632 kb on + strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.648 kb on - strand, within CSW01_17550 at 605.748 kb on - strand, within CSW01_17550 at 605.806 kb on + strand, within CSW01_17550 at 605.814 kb on - strand, within CSW01_17550 at 605.931 kb on + strand, within CSW01_17550 at 605.931 kb on + strand, within CSW01_17550 at 605.931 kb on + strand, within CSW01_17550 at 605.933 kb on + strand, within CSW01_17550 at 605.939 kb on - strand at 605.939 kb on - strand at 605.939 kb on - strand at 605.939 kb on - strand at 605.984 kb on - strand at 605.990 kb on + strand at 605.991 kb on + strand at 605.999 kb on - strand at 606.155 kb on - strand at 606.204 kb on + strand at 606.272 kb on - strand at 606.282 kb on - strand at 606.476 kb on + strand, within CSW01_17555 at 606.482 kb on + strand, within CSW01_17555 at 606.520 kb on + strand, within CSW01_17555 at 606.595 kb on + strand, within CSW01_17555 at 606.619 kb on + strand, within CSW01_17555 at 606.795 kb on + strand, within CSW01_17555 at 606.795 kb on + strand, within CSW01_17555 at 606.825 kb on - strand, within CSW01_17555 at 606.954 kb on - strand, within CSW01_17555
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 604,033 + CSW01_17545 0.31 +1.4 604,039 - CSW01_17545 0.31 -2.3 604,041 - CSW01_17545 0.32 +0.4 604,185 - CSW01_17545 0.43 -0.7 604,202 + CSW01_17545 0.44 -1.9 604,266 - CSW01_17545 0.49 +1.0 604,268 + CSW01_17545 0.49 -1.1 604,276 - CSW01_17545 0.50 +0.6 604,276 - CSW01_17545 0.50 -0.1 604,356 - CSW01_17545 0.56 -2.3 604,566 + CSW01_17545 0.72 +1.7 604,711 - CSW01_17545 0.83 +2.3 604,719 + CSW01_17545 0.84 -0.9 604,761 + CSW01_17545 0.87 -1.5 604,897 + +0.3 604,978 + -0.8 604,983 + -0.3 605,072 - +2.5 605,148 + CSW01_17550 0.12 -0.3 605,345 - CSW01_17550 0.32 -0.5 605,386 + CSW01_17550 0.36 -0.5 605,386 + CSW01_17550 0.36 -0.6 605,386 + CSW01_17550 0.36 +0.1 605,392 - CSW01_17550 0.36 +1.0 605,423 + CSW01_17550 0.39 +0.7 605,464 + CSW01_17550 0.43 -3.2 605,505 + CSW01_17550 0.47 -0.3 605,513 - CSW01_17550 0.48 +0.7 605,524 - CSW01_17550 0.49 -1.3 605,571 + CSW01_17550 0.54 -0.9 605,610 - CSW01_17550 0.58 +0.1 605,627 + CSW01_17550 0.59 +1.3 605,632 + CSW01_17550 0.60 +1.0 605,635 - CSW01_17550 0.60 -0.8 605,635 - CSW01_17550 0.60 +0.5 605,635 - CSW01_17550 0.60 +1.0 605,648 - CSW01_17550 0.61 -0.8 605,748 - CSW01_17550 0.71 -1.4 605,806 + CSW01_17550 0.77 +0.3 605,814 - CSW01_17550 0.78 -0.3 605,931 + CSW01_17550 0.89 +0.2 605,931 + CSW01_17550 0.89 -0.7 605,931 + CSW01_17550 0.89 +3.1 605,933 + CSW01_17550 0.89 +0.9 605,939 - -1.8 605,939 - -2.1 605,939 - -0.2 605,939 - +2.6 605,984 - -0.3 605,990 + +0.9 605,991 + +0.8 605,999 - +0.3 606,155 - -2.3 606,204 + +0.3 606,272 - +0.6 606,282 - +0.6 606,476 + CSW01_17555 0.19 +1.0 606,482 + CSW01_17555 0.20 +0.5 606,520 + CSW01_17555 0.23 +0.3 606,595 + CSW01_17555 0.31 +0.2 606,619 + CSW01_17555 0.33 -0.2 606,795 + CSW01_17555 0.50 +0.8 606,795 + CSW01_17555 0.50 +0.9 606,825 - CSW01_17555 0.53 -0.5 606,954 - CSW01_17555 0.65 -1.6
Or see this region's nucleotide sequence