Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17295 and CSW01_17300 are separated by 2 nucleotides CSW01_17300 and CSW01_17305 are separated by 183 nucleotides CSW01_17305 and CSW01_17310 are separated by 21 nucleotides CSW01_17310 and CSW01_17315 are separated by 84 nucleotides
CSW01_17295: CSW01_17295 - molybdopterin molybdotransferase, at 550,218 to 551,453
_17295
CSW01_17300: CSW01_17300 - molybdopterin-synthase adenylyltransferase MoeB, at 551,456 to 552,220
_17300
CSW01_17305: CSW01_17305 - glyoxalase, at 552,404 to 552,772
_17305
CSW01_17310: CSW01_17310 - 3-mercaptopyruvate sulfurtransferase, at 552,794 to 553,624
_17310
CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704
_17315
Position (kb)
552
553 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 551.432 kb on + strand at 551.437 kb on + strand at 551.437 kb on + strand at 551.440 kb on - strand at 551.440 kb on - strand at 551.440 kb on - strand at 551.445 kb on - strand at 551.450 kb on - strand at 551.489 kb on - strand at 551.544 kb on + strand, within CSW01_17300 at 551.556 kb on + strand, within CSW01_17300 at 551.569 kb on - strand, within CSW01_17300 at 551.582 kb on + strand, within CSW01_17300 at 551.582 kb on + strand, within CSW01_17300 at 551.582 kb on + strand, within CSW01_17300 at 551.590 kb on - strand, within CSW01_17300 at 551.672 kb on - strand, within CSW01_17300 at 551.673 kb on - strand, within CSW01_17300 at 551.684 kb on + strand, within CSW01_17300 at 551.684 kb on + strand, within CSW01_17300 at 551.684 kb on + strand, within CSW01_17300 at 551.684 kb on + strand, within CSW01_17300 at 551.692 kb on - strand, within CSW01_17300 at 551.692 kb on - strand, within CSW01_17300 at 551.692 kb on - strand, within CSW01_17300 at 551.777 kb on + strand, within CSW01_17300 at 551.786 kb on + strand, within CSW01_17300 at 551.794 kb on - strand, within CSW01_17300 at 551.834 kb on + strand, within CSW01_17300 at 551.862 kb on + strand, within CSW01_17300 at 551.870 kb on - strand, within CSW01_17300 at 551.872 kb on + strand, within CSW01_17300 at 551.955 kb on + strand, within CSW01_17300 at 551.974 kb on + strand, within CSW01_17300 at 551.974 kb on + strand, within CSW01_17300 at 552.009 kb on - strand, within CSW01_17300 at 552.019 kb on + strand, within CSW01_17300 at 552.024 kb on + strand, within CSW01_17300 at 552.027 kb on - strand, within CSW01_17300 at 552.032 kb on - strand, within CSW01_17300 at 552.043 kb on - strand, within CSW01_17300 at 552.070 kb on + strand, within CSW01_17300 at 552.079 kb on - strand, within CSW01_17300 at 552.087 kb on + strand, within CSW01_17300 at 552.114 kb on + strand, within CSW01_17300 at 552.122 kb on - strand, within CSW01_17300 at 552.122 kb on - strand, within CSW01_17300 at 552.310 kb on - strand at 552.355 kb on + strand at 552.361 kb on + strand at 552.409 kb on - strand at 552.489 kb on + strand, within CSW01_17305 at 552.538 kb on - strand, within CSW01_17305 at 552.561 kb on + strand, within CSW01_17305 at 552.586 kb on - strand, within CSW01_17305 at 552.586 kb on - strand, within CSW01_17305 at 552.589 kb on + strand, within CSW01_17305 at 552.637 kb on + strand, within CSW01_17305 at 552.637 kb on + strand, within CSW01_17305 at 552.645 kb on - strand, within CSW01_17305 at 552.683 kb on + strand, within CSW01_17305 at 552.697 kb on + strand, within CSW01_17305 at 552.705 kb on - strand, within CSW01_17305 at 552.705 kb on - strand, within CSW01_17305 at 552.705 kb on - strand, within CSW01_17305 at 552.993 kb on + strand, within CSW01_17310 at 552.993 kb on + strand, within CSW01_17310 at 553.001 kb on - strand, within CSW01_17310 at 553.001 kb on - strand, within CSW01_17310 at 553.006 kb on + strand, within CSW01_17310 at 553.014 kb on - strand, within CSW01_17310 at 553.138 kb on - strand, within CSW01_17310 at 553.189 kb on + strand, within CSW01_17310 at 553.252 kb on - strand, within CSW01_17310 at 553.307 kb on - strand, within CSW01_17310 at 553.367 kb on + strand, within CSW01_17310 at 553.405 kb on + strand, within CSW01_17310 at 553.405 kb on + strand, within CSW01_17310 at 553.405 kb on + strand, within CSW01_17310 at 553.405 kb on + strand, within CSW01_17310 at 553.458 kb on + strand, within CSW01_17310 at 553.458 kb on + strand, within CSW01_17310 at 553.466 kb on - strand, within CSW01_17310 at 553.468 kb on + strand, within CSW01_17310 at 553.473 kb on + strand, within CSW01_17310 at 553.476 kb on - strand, within CSW01_17310 at 553.503 kb on + strand, within CSW01_17310 at 553.503 kb on + strand, within CSW01_17310 at 553.511 kb on - strand, within CSW01_17310 at 553.518 kb on + strand, within CSW01_17310 at 553.521 kb on + strand, within CSW01_17310 at 553.521 kb on + strand, within CSW01_17310 at 553.521 kb on + strand, within CSW01_17310 at 553.529 kb on - strand, within CSW01_17310 at 553.538 kb on + strand, within CSW01_17310 at 553.548 kb on - strand at 553.589 kb on + strand at 553.598 kb on - strand at 553.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 551,432 + -0.3 551,437 + -1.7 551,437 + +1.4 551,440 - -4.2 551,440 - +0.2 551,440 - -1.0 551,445 - +0.7 551,450 - +0.4 551,489 - -1.8 551,544 + CSW01_17300 0.12 -0.4 551,556 + CSW01_17300 0.13 +0.9 551,569 - CSW01_17300 0.15 +0.2 551,582 + CSW01_17300 0.16 +0.0 551,582 + CSW01_17300 0.16 -2.8 551,582 + CSW01_17300 0.16 -2.3 551,590 - CSW01_17300 0.18 -0.4 551,672 - CSW01_17300 0.28 -0.8 551,673 - CSW01_17300 0.28 +0.1 551,684 + CSW01_17300 0.30 +0.3 551,684 + CSW01_17300 0.30 -2.2 551,684 + CSW01_17300 0.30 +1.0 551,684 + CSW01_17300 0.30 +0.5 551,692 - CSW01_17300 0.31 +1.4 551,692 - CSW01_17300 0.31 -1.7 551,692 - CSW01_17300 0.31 +0.7 551,777 + CSW01_17300 0.42 -0.7 551,786 + CSW01_17300 0.43 -1.7 551,794 - CSW01_17300 0.44 -1.4 551,834 + CSW01_17300 0.49 -1.5 551,862 + CSW01_17300 0.53 +0.3 551,870 - CSW01_17300 0.54 -2.3 551,872 + CSW01_17300 0.54 -1.6 551,955 + CSW01_17300 0.65 +1.4 551,974 + CSW01_17300 0.68 -0.2 551,974 + CSW01_17300 0.68 +0.4 552,009 - CSW01_17300 0.72 -3.5 552,019 + CSW01_17300 0.74 +0.7 552,024 + CSW01_17300 0.74 +0.6 552,027 - CSW01_17300 0.75 +1.0 552,032 - CSW01_17300 0.75 +0.0 552,043 - CSW01_17300 0.77 +0.1 552,070 + CSW01_17300 0.80 -0.7 552,079 - CSW01_17300 0.81 +0.4 552,087 + CSW01_17300 0.82 -1.1 552,114 + CSW01_17300 0.86 +0.2 552,122 - CSW01_17300 0.87 -0.4 552,122 - CSW01_17300 0.87 -1.2 552,310 - -2.4 552,355 + +0.3 552,361 + +0.8 552,409 - -2.3 552,489 + CSW01_17305 0.23 +0.2 552,538 - CSW01_17305 0.36 -1.0 552,561 + CSW01_17305 0.43 +0.7 552,586 - CSW01_17305 0.49 +1.2 552,586 - CSW01_17305 0.49 -1.2 552,589 + CSW01_17305 0.50 +1.0 552,637 + CSW01_17305 0.63 -2.5 552,637 + CSW01_17305 0.63 +0.6 552,645 - CSW01_17305 0.65 -1.6 552,683 + CSW01_17305 0.76 +1.2 552,697 + CSW01_17305 0.79 -0.5 552,705 - CSW01_17305 0.82 +0.2 552,705 - CSW01_17305 0.82 -0.0 552,705 - CSW01_17305 0.82 +0.1 552,993 + CSW01_17310 0.24 +1.3 552,993 + CSW01_17310 0.24 +0.4 553,001 - CSW01_17310 0.25 -1.1 553,001 - CSW01_17310 0.25 +0.8 553,006 + CSW01_17310 0.26 +0.5 553,014 - CSW01_17310 0.26 +1.1 553,138 - CSW01_17310 0.41 -1.1 553,189 + CSW01_17310 0.48 -0.5 553,252 - CSW01_17310 0.55 +1.5 553,307 - CSW01_17310 0.62 -0.4 553,367 + CSW01_17310 0.69 -1.6 553,405 + CSW01_17310 0.74 -0.5 553,405 + CSW01_17310 0.74 -3.0 553,405 + CSW01_17310 0.74 -2.1 553,405 + CSW01_17310 0.74 +0.8 553,458 + CSW01_17310 0.80 +0.8 553,458 + CSW01_17310 0.80 -0.4 553,466 - CSW01_17310 0.81 -0.2 553,468 + CSW01_17310 0.81 -0.8 553,473 + CSW01_17310 0.82 -0.6 553,476 - CSW01_17310 0.82 +1.3 553,503 + CSW01_17310 0.85 +1.9 553,503 + CSW01_17310 0.85 -1.0 553,511 - CSW01_17310 0.86 -2.3 553,518 + CSW01_17310 0.87 +0.9 553,521 + CSW01_17310 0.87 -0.8 553,521 + CSW01_17310 0.87 -1.3 553,521 + CSW01_17310 0.87 -1.9 553,529 - CSW01_17310 0.88 -3.2 553,538 + CSW01_17310 0.90 -1.6 553,548 - -0.9 553,589 + -0.5 553,598 - -1.4 553,749 - -0.1
Or see this region's nucleotide sequence