Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17275

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17265 and CSW01_17270 are separated by 4 nucleotidesCSW01_17270 and CSW01_17275 are separated by 270 nucleotidesCSW01_17275 and CSW01_17280 are separated by 230 nucleotides CSW01_17265: CSW01_17265 - hypothetical protein, at 544,511 to 544,693 _17265 CSW01_17270: CSW01_17270 - isoprenoid biosynthesis protein ElbB, at 544,698 to 545,348 _17270 CSW01_17275: CSW01_17275 - large conductance mechanosensitive channel protein MscL, at 545,619 to 546,029 _17275 CSW01_17280: CSW01_17280 - formate--tetrahydrofolate ligase, at 546,260 to 548,008 _17280 Position (kb) 545 546 547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 544.629 kb on - strand, within CSW01_17265at 544.659 kb on + strand, within CSW01_17265at 544.659 kb on + strand, within CSW01_17265at 544.667 kb on - strand, within CSW01_17265at 544.734 kb on + strandat 544.734 kb on + strandat 544.746 kb on + strandat 544.751 kb on + strandat 544.810 kb on + strand, within CSW01_17270at 544.810 kb on + strand, within CSW01_17270at 544.810 kb on + strand, within CSW01_17270at 544.824 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.865 kb on - strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.032 kb on + strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.091 kb on + strand, within CSW01_17270at 545.099 kb on - strand, within CSW01_17270at 545.099 kb on - strand, within CSW01_17270at 545.101 kb on + strand, within CSW01_17270at 545.101 kb on + strand, within CSW01_17270at 545.171 kb on - strand, within CSW01_17270at 545.205 kb on + strand, within CSW01_17270at 545.220 kb on + strand, within CSW01_17270at 545.220 kb on + strand, within CSW01_17270at 545.228 kb on - strand, within CSW01_17270at 545.381 kb on + strandat 545.389 kb on - strandat 545.410 kb on + strandat 545.415 kb on + strandat 545.415 kb on + strandat 545.418 kb on - strandat 545.561 kb on - strandat 545.636 kb on + strandat 545.935 kb on - strand, within CSW01_17275at 546.261 kb on - strandat 546.263 kb on - strandat 546.364 kb on + strandat 546.385 kb on + strandat 546.390 kb on + strandat 546.393 kb on - strandat 546.398 kb on - strandat 546.494 kb on + strand, within CSW01_17280at 546.494 kb on + strand, within CSW01_17280at 546.500 kb on + strand, within CSW01_17280at 546.544 kb on + strand, within CSW01_17280at 546.552 kb on - strand, within CSW01_17280at 546.553 kb on - strand, within CSW01_17280at 546.753 kb on + strand, within CSW01_17280at 546.887 kb on + strand, within CSW01_17280at 546.936 kb on + strand, within CSW01_17280at 546.936 kb on + strand, within CSW01_17280at 546.982 kb on + strand, within CSW01_17280at 546.989 kb on + strand, within CSW01_17280

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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544,629 - CSW01_17265 0.64 -2.2
544,659 + CSW01_17265 0.81 -3.3
544,659 + CSW01_17265 0.81 -1.1
544,667 - CSW01_17265 0.85 -3.6
544,734 + -1.4
544,734 + -2.1
544,746 + +0.4
544,751 + -4.0
544,810 + CSW01_17270 0.17 +0.2
544,810 + CSW01_17270 0.17 -0.1
544,810 + CSW01_17270 0.17 +1.8
544,824 + CSW01_17270 0.19 -1.0
544,857 + CSW01_17270 0.24 +0.8
544,857 + CSW01_17270 0.24 +0.9
544,857 + CSW01_17270 0.24 +1.6
544,865 - CSW01_17270 0.26 +0.6
545,027 + CSW01_17270 0.51 -1.8
545,027 + CSW01_17270 0.51 +1.2
545,027 + CSW01_17270 0.51 +1.0
545,027 + CSW01_17270 0.51 +0.4
545,027 + CSW01_17270 0.51 -1.6
545,032 + CSW01_17270 0.51 +0.1
545,035 - CSW01_17270 0.52 +0.6
545,035 - CSW01_17270 0.52 -2.1
545,035 - CSW01_17270 0.52 +0.4
545,035 - CSW01_17270 0.52 -0.2
545,035 - CSW01_17270 0.52 -2.0
545,035 - CSW01_17270 0.52 +0.8
545,035 - CSW01_17270 0.52 -0.0
545,035 - CSW01_17270 0.52 +1.8
545,091 + CSW01_17270 0.60 -1.4
545,099 - CSW01_17270 0.62 +0.8
545,099 - CSW01_17270 0.62 +1.9
545,101 + CSW01_17270 0.62 +0.7
545,101 + CSW01_17270 0.62 +0.7
545,171 - CSW01_17270 0.73 -1.3
545,205 + CSW01_17270 0.78 +1.0
545,220 + CSW01_17270 0.80 +1.3
545,220 + CSW01_17270 0.80 -2.2
545,228 - CSW01_17270 0.81 +0.5
545,381 + +1.0
545,389 - +0.9
545,410 + -1.5
545,415 + +1.9
545,415 + -0.9
545,418 - -2.5
545,561 - +1.1
545,636 + +0.7
545,935 - CSW01_17275 0.77 -2.0
546,261 - +0.4
546,263 - -2.4
546,364 + -0.9
546,385 + -1.7
546,390 + -0.1
546,393 - -2.8
546,398 - +0.9
546,494 + CSW01_17280 0.13 -1.2
546,494 + CSW01_17280 0.13 +1.4
546,500 + CSW01_17280 0.14 -2.7
546,544 + CSW01_17280 0.16 +1.1
546,552 - CSW01_17280 0.17 -2.2
546,553 - CSW01_17280 0.17 -2.1
546,753 + CSW01_17280 0.28 +0.4
546,887 + CSW01_17280 0.36 -0.5
546,936 + CSW01_17280 0.39 -0.3
546,936 + CSW01_17280 0.39 +1.0
546,982 + CSW01_17280 0.41 -2.6
546,989 + CSW01_17280 0.42 +0.4

Or see this region's nucleotide sequence