Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17235

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17230 and CSW01_17235 are separated by 155 nucleotidesCSW01_17235 and CSW01_17240 are separated by 231 nucleotides CSW01_17230: CSW01_17230 - putative 2-aminoethylphosphonate ABC transporter ATP-binding protein, at 537,051 to 538,262 _17230 CSW01_17235: CSW01_17235 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 538,418 to 539,437 _17235 CSW01_17240: CSW01_17240 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 539,669 to 540,772 _17240 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 537.518 kb on - strand, within CSW01_17230at 537.519 kb on + strand, within CSW01_17230at 537.520 kb on + strand, within CSW01_17230at 537.528 kb on - strand, within CSW01_17230at 537.562 kb on - strand, within CSW01_17230at 537.573 kb on + strand, within CSW01_17230at 537.581 kb on - strand, within CSW01_17230at 537.661 kb on + strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230at 538.165 kb on + strandat 538.165 kb on + strandat 538.173 kb on + strandat 538.460 kb on + strandat 538.460 kb on + strandat 538.538 kb on + strand, within CSW01_17235at 538.573 kb on + strand, within CSW01_17235at 538.573 kb on + strand, within CSW01_17235at 538.581 kb on - strand, within CSW01_17235at 538.581 kb on - strand, within CSW01_17235at 538.592 kb on + strand, within CSW01_17235at 538.637 kb on - strand, within CSW01_17235at 538.699 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.967 kb on + strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 539.087 kb on + strand, within CSW01_17235at 539.095 kb on - strand, within CSW01_17235at 539.115 kb on + strand, within CSW01_17235at 539.341 kb on - strandat 539.365 kb on + strandat 539.380 kb on + strandat 539.383 kb on - strandat 539.392 kb on + strandat 539.400 kb on - strandat 539.400 kb on - strandat 539.632 kb on - strandat 539.684 kb on + strandat 539.815 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.868 kb on + strand, within CSW01_17240at 539.873 kb on + strand, within CSW01_17240at 539.881 kb on - strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.942 kb on - strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.135 kb on + strand, within CSW01_17240at 540.212 kb on - strand, within CSW01_17240at 540.260 kb on - strand, within CSW01_17240at 540.292 kb on - strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.333 kb on + strand, within CSW01_17240at 540.402 kb on + strand, within CSW01_17240at 540.412 kb on - strand, within CSW01_17240at 540.421 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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537,518 - CSW01_17230 0.39 -2.6
537,519 + CSW01_17230 0.39 -0.0
537,520 + CSW01_17230 0.39 -2.0
537,528 - CSW01_17230 0.39 -1.5
537,562 - CSW01_17230 0.42 -0.6
537,573 + CSW01_17230 0.43 +1.2
537,581 - CSW01_17230 0.44 -1.9
537,661 + CSW01_17230 0.50 -0.8
537,820 - CSW01_17230 0.63 -2.5
537,820 - CSW01_17230 0.63 -2.4
538,165 + -1.2
538,165 + +0.0
538,173 + -2.4
538,460 + -0.5
538,460 + -0.9
538,538 + CSW01_17235 0.12 -2.9
538,573 + CSW01_17235 0.15 -0.4
538,573 + CSW01_17235 0.15 -2.0
538,581 - CSW01_17235 0.16 +0.9
538,581 - CSW01_17235 0.16 -2.1
538,592 + CSW01_17235 0.17 +0.5
538,637 - CSW01_17235 0.21 +1.3
538,699 + CSW01_17235 0.28 +0.8
538,929 + CSW01_17235 0.50 +1.1
538,929 + CSW01_17235 0.50 -2.1
538,937 - CSW01_17235 0.51 -0.1
538,937 - CSW01_17235 0.51 +0.5
538,937 - CSW01_17235 0.51 -0.1
538,937 - CSW01_17235 0.51 +0.4
538,937 - CSW01_17235 0.51 +0.2
538,937 - CSW01_17235 0.51 -1.6
538,967 + CSW01_17235 0.54 -3.1
538,970 - CSW01_17235 0.54 -1.8
538,970 - CSW01_17235 0.54 -1.2
539,087 + CSW01_17235 0.66 +0.7
539,095 - CSW01_17235 0.66 +1.1
539,115 + CSW01_17235 0.68 -2.4
539,341 - +1.8
539,365 + -2.5
539,380 + -0.7
539,383 - +1.1
539,392 + +0.3
539,400 - +0.7
539,400 - +1.1
539,632 - +0.1
539,684 + +0.9
539,815 + CSW01_17240 0.13 -0.4
539,849 + CSW01_17240 0.16 +0.7
539,849 + CSW01_17240 0.16 +3.3
539,868 + CSW01_17240 0.18 -0.6
539,873 + CSW01_17240 0.18 -1.6
539,881 - CSW01_17240 0.19 -0.9
539,907 + CSW01_17240 0.22 -0.7
539,907 + CSW01_17240 0.22 +0.9
539,942 - CSW01_17240 0.25 +0.3
540,016 + CSW01_17240 0.31 -1.2
540,016 + CSW01_17240 0.31 -0.6
540,016 + CSW01_17240 0.31 -0.7
540,024 - CSW01_17240 0.32 -0.3
540,024 - CSW01_17240 0.32 +0.4
540,024 - CSW01_17240 0.32 -2.2
540,024 - CSW01_17240 0.32 +0.5
540,135 + CSW01_17240 0.42 -1.3
540,212 - CSW01_17240 0.49 -2.0
540,260 - CSW01_17240 0.54 -1.1
540,292 - CSW01_17240 0.56 -2.1
540,297 + CSW01_17240 0.57 -0.0
540,297 + CSW01_17240 0.57 +0.1
540,297 + CSW01_17240 0.57 +0.3
540,305 - CSW01_17240 0.58 +0.7
540,305 - CSW01_17240 0.58 -1.8
540,305 - CSW01_17240 0.58 +0.4
540,333 + CSW01_17240 0.60 -1.6
540,402 + CSW01_17240 0.66 +1.8
540,412 - CSW01_17240 0.67 -1.9
540,421 + CSW01_17240 0.68 -1.0
540,423 + CSW01_17240 0.68 -1.7
540,423 + CSW01_17240 0.68 -1.4

Or see this region's nucleotide sequence