Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17065 and CSW01_17070 are separated by 40 nucleotides CSW01_17070 and CSW01_17075 are separated by 584 nucleotides CSW01_17075 and CSW01_17080 are separated by 7 nucleotides
CSW01_17065: CSW01_17065 - conjugal transfer protein TraF, at 504,513 to 505,679
_17065
CSW01_17070: CSW01_17070 - YoaH family protein, at 505,720 to 505,881
_17070
CSW01_17075: CSW01_17075 - stress response translation initiation inhibitor YciH, at 506,466 to 506,777
_17075
CSW01_17080: CSW01_17080 - DUF3319 domain-containing protein, at 506,785 to 507,168
_17080
Position (kb) 505
506 Strain fitness (log2 ratio) -1
0
1
2 at 504.749 kb on + strand, within CSW01_17065 at 504.858 kb on + strand, within CSW01_17065 at 504.880 kb on + strand, within CSW01_17065 at 504.888 kb on - strand, within CSW01_17065 at 504.935 kb on + strand, within CSW01_17065 at 504.935 kb on + strand, within CSW01_17065 at 504.943 kb on - strand, within CSW01_17065 at 504.943 kb on - strand, within CSW01_17065 at 505.065 kb on + strand, within CSW01_17065 at 505.134 kb on + strand, within CSW01_17065 at 505.142 kb on - strand, within CSW01_17065 at 505.413 kb on - strand, within CSW01_17065 at 505.519 kb on + strand, within CSW01_17065 at 505.701 kb on + strand at 505.701 kb on + strand at 505.701 kb on + strand at 505.739 kb on + strand, within CSW01_17070 at 505.739 kb on + strand, within CSW01_17070 at 505.805 kb on + strand, within CSW01_17070 at 506.007 kb on + strand at 506.128 kb on - strand at 506.520 kb on - strand, within CSW01_17075 at 506.638 kb on - strand, within CSW01_17075 at 506.639 kb on - strand, within CSW01_17075 at 506.737 kb on + strand, within CSW01_17075 at 506.745 kb on - strand, within CSW01_17075
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 504,749 + CSW01_17065 0.20 -1.7 504,858 + CSW01_17065 0.30 -0.3 504,880 + CSW01_17065 0.31 -0.3 504,888 - CSW01_17065 0.32 +2.4 504,935 + CSW01_17065 0.36 +2.5 504,935 + CSW01_17065 0.36 -0.6 504,943 - CSW01_17065 0.37 +1.1 504,943 - CSW01_17065 0.37 +1.7 505,065 + CSW01_17065 0.47 +0.0 505,134 + CSW01_17065 0.53 -1.7 505,142 - CSW01_17065 0.54 -0.4 505,413 - CSW01_17065 0.77 +0.4 505,519 + CSW01_17065 0.86 -0.2 505,701 + +0.5 505,701 + -0.1 505,701 + -0.8 505,739 + CSW01_17070 0.12 -0.1 505,739 + CSW01_17070 0.12 -0.9 505,805 + CSW01_17070 0.52 -0.7 506,007 + +0.4 506,128 - -0.6 506,520 - CSW01_17075 0.17 -0.5 506,638 - CSW01_17075 0.55 +0.7 506,639 - CSW01_17075 0.55 +0.4 506,737 + CSW01_17075 0.87 -0.5 506,745 - CSW01_17075 0.89 +2.4
Or see this region's nucleotide sequence