Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16855

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16850 and CSW01_16855 are separated by 228 nucleotidesCSW01_16855 and CSW01_16860 are separated by 196 nucleotides CSW01_16850: CSW01_16850 - hybrid sensor histidine kinase/response regulator, at 452,915 to 454,975 _16850 CSW01_16855: CSW01_16855 - CAI-1 autoinducer synthase, at 455,204 to 456,373 _16855 CSW01_16860: CSW01_16860 - tellurium resistance protein, at 456,570 to 457,532 _16860 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 454.364 kb on - strand, within CSW01_16850at 454.364 kb on - strand, within CSW01_16850at 454.405 kb on - strand, within CSW01_16850at 454.593 kb on - strand, within CSW01_16850at 454.728 kb on + strand, within CSW01_16850at 454.736 kb on - strand, within CSW01_16850at 454.821 kb on - strandat 454.831 kb on - strandat 454.862 kb on + strandat 454.862 kb on + strandat 454.870 kb on - strandat 454.870 kb on - strandat 454.870 kb on - strandat 454.881 kb on + strandat 454.891 kb on + strandat 454.899 kb on + strandat 454.907 kb on - strandat 454.983 kb on - strandat 454.983 kb on - strandat 454.983 kb on - strandat 454.997 kb on + strandat 455.084 kb on + strandat 455.084 kb on + strandat 455.236 kb on + strandat 455.236 kb on + strandat 455.241 kb on + strandat 455.244 kb on - strandat 455.249 kb on - strandat 455.249 kb on - strandat 455.249 kb on - strandat 455.281 kb on + strandat 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.336 kb on + strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.344 kb on - strand, within CSW01_16855at 455.348 kb on + strand, within CSW01_16855at 455.364 kb on - strand, within CSW01_16855at 455.364 kb on - strand, within CSW01_16855at 455.443 kb on + strand, within CSW01_16855at 455.459 kb on + strand, within CSW01_16855at 455.565 kb on - strand, within CSW01_16855at 455.567 kb on - strand, within CSW01_16855at 455.631 kb on - strand, within CSW01_16855at 455.636 kb on - strand, within CSW01_16855at 455.642 kb on - strand, within CSW01_16855at 455.647 kb on - strand, within CSW01_16855at 455.663 kb on + strand, within CSW01_16855at 455.664 kb on - strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.695 kb on + strand, within CSW01_16855at 455.707 kb on + strand, within CSW01_16855at 455.740 kb on + strand, within CSW01_16855at 455.748 kb on - strand, within CSW01_16855at 455.751 kb on + strand, within CSW01_16855at 455.757 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.786 kb on + strand, within CSW01_16855at 455.792 kb on - strand, within CSW01_16855at 455.794 kb on - strand, within CSW01_16855at 455.841 kb on + strand, within CSW01_16855at 455.877 kb on - strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.933 kb on + strand, within CSW01_16855at 455.941 kb on - strand, within CSW01_16855at 455.953 kb on - strand, within CSW01_16855at 455.967 kb on + strand, within CSW01_16855at 456.054 kb on + strand, within CSW01_16855at 456.081 kb on + strand, within CSW01_16855at 456.108 kb on + strand, within CSW01_16855at 456.145 kb on - strand, within CSW01_16855at 456.203 kb on - strand, within CSW01_16855at 456.210 kb on + strand, within CSW01_16855at 456.213 kb on - strand, within CSW01_16855at 456.266 kb on - strandat 456.284 kb on - strandat 456.333 kb on + strandat 456.363 kb on + strandat 456.366 kb on - strandat 456.371 kb on + strandat 456.376 kb on + strandat 456.533 kb on - strandat 456.607 kb on - strandat 456.658 kb on + strandat 456.688 kb on + strand, within CSW01_16860at 456.689 kb on + strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.697 kb on - strand, within CSW01_16860at 456.701 kb on - strand, within CSW01_16860at 456.823 kb on - strand, within CSW01_16860at 456.845 kb on - strand, within CSW01_16860at 456.867 kb on - strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 456.918 kb on + strand, within CSW01_16860at 457.026 kb on - strand, within CSW01_16860at 457.277 kb on + strand, within CSW01_16860at 457.285 kb on - strand, within CSW01_16860at 457.295 kb on + strand, within CSW01_16860at 457.362 kb on - strand, within CSW01_16860

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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454,364 - CSW01_16850 0.70 +1.1
454,364 - CSW01_16850 0.70 -1.5
454,405 - CSW01_16850 0.72 +0.9
454,593 - CSW01_16850 0.81 +0.9
454,728 + CSW01_16850 0.88 +0.5
454,736 - CSW01_16850 0.88 -1.7
454,821 - -2.4
454,831 - -0.0
454,862 + -1.9
454,862 + +0.9
454,870 - +0.3
454,870 - -2.3
454,870 - +0.7
454,881 + +0.4
454,891 + +0.4
454,899 + -1.0
454,907 - +1.8
454,983 - +0.2
454,983 - +1.4
454,983 - +0.8
454,997 + +0.9
455,084 + -0.8
455,084 + +1.4
455,236 + -0.8
455,236 + -2.8
455,241 + -2.1
455,244 - -0.2
455,249 - -0.5
455,249 - -0.3
455,249 - -0.4
455,281 + +0.9
455,336 + CSW01_16855 0.11 -1.1
455,336 + CSW01_16855 0.11 +0.7
455,336 + CSW01_16855 0.11 -0.4
455,336 + CSW01_16855 0.11 +0.1
455,336 + CSW01_16855 0.11 +0.1
455,336 + CSW01_16855 0.11 -0.4
455,336 + CSW01_16855 0.11 -0.4
455,336 + CSW01_16855 0.11 +1.3
455,344 - CSW01_16855 0.12 +0.5
455,344 - CSW01_16855 0.12 -1.4
455,344 - CSW01_16855 0.12 +0.5
455,344 - CSW01_16855 0.12 -1.0
455,348 + CSW01_16855 0.12 -0.5
455,364 - CSW01_16855 0.14 +1.1
455,364 - CSW01_16855 0.14 +0.4
455,443 + CSW01_16855 0.20 -0.9
455,459 + CSW01_16855 0.22 -0.4
455,565 - CSW01_16855 0.31 +1.0
455,567 - CSW01_16855 0.31 +0.8
455,631 - CSW01_16855 0.36 -0.3
455,636 - CSW01_16855 0.37 +0.5
455,642 - CSW01_16855 0.37 +0.1
455,647 - CSW01_16855 0.38 -0.6
455,663 + CSW01_16855 0.39 +0.3
455,664 - CSW01_16855 0.39 -3.2
455,695 + CSW01_16855 0.42 -0.7
455,695 + CSW01_16855 0.42 +0.5
455,695 + CSW01_16855 0.42 +0.8
455,707 + CSW01_16855 0.43 -0.9
455,740 + CSW01_16855 0.46 +1.5
455,748 - CSW01_16855 0.46 -0.7
455,751 + CSW01_16855 0.47 +1.5
455,757 + CSW01_16855 0.47 +0.3
455,786 + CSW01_16855 0.50 -0.5
455,786 + CSW01_16855 0.50 -2.8
455,786 + CSW01_16855 0.50 +0.6
455,792 - CSW01_16855 0.50 -1.6
455,794 - CSW01_16855 0.50 +0.7
455,841 + CSW01_16855 0.54 -1.3
455,877 - CSW01_16855 0.58 +0.9
455,933 + CSW01_16855 0.62 -1.2
455,933 + CSW01_16855 0.62 -1.8
455,941 - CSW01_16855 0.63 +0.5
455,953 - CSW01_16855 0.64 +0.8
455,967 + CSW01_16855 0.65 -1.5
456,054 + CSW01_16855 0.73 +0.8
456,081 + CSW01_16855 0.75 -3.7
456,108 + CSW01_16855 0.77 -1.3
456,145 - CSW01_16855 0.80 +0.3
456,203 - CSW01_16855 0.85 +0.6
456,210 + CSW01_16855 0.86 -0.4
456,213 - CSW01_16855 0.86 -0.4
456,266 - +1.3
456,284 - -0.4
456,333 + +1.7
456,363 + +0.8
456,366 - -1.7
456,371 + -2.2
456,376 + -0.5
456,533 - +0.3
456,607 - -0.3
456,658 + -0.4
456,688 + CSW01_16860 0.12 -0.6
456,689 + CSW01_16860 0.12 +0.4
456,697 - CSW01_16860 0.13 +1.5
456,697 - CSW01_16860 0.13 -1.0
456,701 - CSW01_16860 0.14 -1.9
456,823 - CSW01_16860 0.26 -0.2
456,845 - CSW01_16860 0.29 -1.5
456,867 - CSW01_16860 0.31 +0.1
456,918 + CSW01_16860 0.36 +0.6
456,918 + CSW01_16860 0.36 -2.0
456,918 + CSW01_16860 0.36 -0.9
456,918 + CSW01_16860 0.36 -2.5
457,026 - CSW01_16860 0.47 +1.0
457,277 + CSW01_16860 0.73 +0.2
457,285 - CSW01_16860 0.74 +0.2
457,295 + CSW01_16860 0.75 -2.4
457,362 - CSW01_16860 0.82 +0.2

Or see this region's nucleotide sequence