Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16615

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16600 and CSW01_16605 are separated by 74 nucleotidesCSW01_16605 and CSW01_16610 are separated by 192 nucleotidesCSW01_16610 and CSW01_16615 overlap by 14 nucleotidesCSW01_16615 and CSW01_16620 are separated by 127 nucleotidesCSW01_16620 and CSW01_16625 are separated by 56 nucleotidesCSW01_16625 and CSW01_16630 are separated by 114 nucleotides CSW01_16600: CSW01_16600 - DUF3265 domain-containing protein, at 417,369 to 417,479 _16600 CSW01_16605: CSW01_16605 - VOC family protein, at 417,554 to 417,967 _16605 CSW01_16610: CSW01_16610 - prevent-host-death family protein, at 418,160 to 418,432 _16610 CSW01_16615: CSW01_16615 - type II toxin-antitoxin system RelE/ParE family toxin, at 418,419 to 418,709 _16615 CSW01_16620: CSW01_16620 - N-acetyltransferase, at 418,837 to 419,292 _16620 CSW01_16625: CSW01_16625 - acetyltransferase, at 419,349 to 419,471 _16625 CSW01_16630: CSW01_16630 - DUF645 domain-containing protein, at 419,586 to 419,766 _16630 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 417.481 kb on - strandat 418.264 kb on - strand, within CSW01_16610at 418.609 kb on - strand, within CSW01_16615at 419.473 kb on - strandat 419.695 kb on - strand, within CSW01_16630at 419.704 kb on - strand, within CSW01_16630

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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417,481 - -2.0
418,264 - CSW01_16610 0.38 -0.1
418,609 - CSW01_16615 0.65 +1.6
419,473 - -0.3
419,695 - CSW01_16630 0.60 -2.7
419,704 - CSW01_16630 0.65 +2.6

Or see this region's nucleotide sequence