Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16215

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16205 and CSW01_16210 are separated by 162 nucleotidesCSW01_16210 and CSW01_16215 are separated by 182 nucleotidesCSW01_16215 and CSW01_16220 are separated by 280 nucleotidesCSW01_16220 and CSW01_16225 are separated by 138 nucleotides CSW01_16205: CSW01_16205 - DUF3465 domain-containing protein, at 380,379 to 380,804 _16205 CSW01_16210: CSW01_16210 - VOC family protein, at 380,967 to 381,326 _16210 CSW01_16215: CSW01_16215 - DUF3709 domain-containing protein, at 381,509 to 381,832 _16215 CSW01_16220: CSW01_16220 - N-acetyltransferase, at 382,113 to 382,649 _16220 CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105 _16225 Position (kb) 381 382Strain fitness (log2 ratio) -2 -1 0 1 2at 380.515 kb on + strand, within CSW01_16205at 380.522 kb on + strand, within CSW01_16205at 380.522 kb on + strand, within CSW01_16205at 380.530 kb on + strand, within CSW01_16205at 380.549 kb on + strand, within CSW01_16205at 380.572 kb on - strand, within CSW01_16205at 380.923 kb on + strandat 381.020 kb on - strand, within CSW01_16210at 381.102 kb on + strand, within CSW01_16210at 381.470 kb on + strandat 381.612 kb on + strand, within CSW01_16215at 381.713 kb on - strand, within CSW01_16215at 382.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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380,515 + CSW01_16205 0.32 -1.0
380,522 + CSW01_16205 0.34 -0.5
380,522 + CSW01_16205 0.34 +1.0
380,530 + CSW01_16205 0.35 -1.4
380,549 + CSW01_16205 0.40 -1.9
380,572 - CSW01_16205 0.45 -2.2
380,923 + +1.3
381,020 - CSW01_16210 0.15 +1.8
381,102 + CSW01_16210 0.38 -0.1
381,470 + +0.8
381,612 + CSW01_16215 0.32 -1.7
381,713 - CSW01_16215 0.63 -0.8
382,793 - +1.4

Or see this region's nucleotide sequence