Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16195 and CSW01_16200 are separated by 195 nucleotides CSW01_16200 and CSW01_16205 are separated by 124 nucleotides CSW01_16205 and CSW01_16210 are separated by 162 nucleotides CSW01_16210 and CSW01_16215 are separated by 182 nucleotides
CSW01_16195: CSW01_16195 - DUF645 domain-containing protein, at 379,226 to 379,405
_16195
CSW01_16200: CSW01_16200 - hypothetical protein, at 379,601 to 380,254
_16200
CSW01_16205: CSW01_16205 - DUF3465 domain-containing protein, at 380,379 to 380,804
_16205
CSW01_16210: CSW01_16210 - VOC family protein, at 380,967 to 381,326
_16210
CSW01_16215: CSW01_16215 - DUF3709 domain-containing protein, at 381,509 to 381,832
_16215
Position (kb) 380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.389 kb on - strand at 379.523 kb on + strand at 379.523 kb on + strand at 379.574 kb on - strand at 379.579 kb on + strand at 379.585 kb on - strand at 379.589 kb on + strand at 379.597 kb on + strand at 379.597 kb on + strand at 379.597 kb on - strand at 379.605 kb on + strand at 379.605 kb on - strand at 379.605 kb on - strand at 379.607 kb on - strand at 379.613 kb on - strand at 379.813 kb on - strand, within CSW01_16200 at 379.827 kb on + strand, within CSW01_16200 at 379.827 kb on + strand, within CSW01_16200 at 379.859 kb on + strand, within CSW01_16200 at 379.871 kb on + strand, within CSW01_16200 at 379.871 kb on - strand, within CSW01_16200 at 379.873 kb on + strand, within CSW01_16200 at 379.879 kb on - strand, within CSW01_16200 at 379.900 kb on + strand, within CSW01_16200 at 379.997 kb on + strand, within CSW01_16200 at 380.053 kb on + strand, within CSW01_16200 at 380.062 kb on + strand, within CSW01_16200 at 380.062 kb on + strand, within CSW01_16200 at 380.070 kb on - strand, within CSW01_16200 at 380.070 kb on - strand, within CSW01_16200 at 380.111 kb on - strand, within CSW01_16200 at 380.119 kb on + strand, within CSW01_16200 at 380.119 kb on + strand, within CSW01_16200 at 380.119 kb on + strand, within CSW01_16200 at 380.119 kb on + strand, within CSW01_16200 at 380.119 kb on + strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.127 kb on - strand, within CSW01_16200 at 380.153 kb on + strand, within CSW01_16200 at 380.153 kb on + strand, within CSW01_16200 at 380.154 kb on - strand, within CSW01_16200 at 380.202 kb on - strand at 380.239 kb on - strand at 380.245 kb on - strand at 380.269 kb on - strand at 380.269 kb on - strand at 380.515 kb on + strand, within CSW01_16205 at 380.522 kb on + strand, within CSW01_16205 at 380.522 kb on + strand, within CSW01_16205 at 380.530 kb on + strand, within CSW01_16205 at 380.549 kb on + strand, within CSW01_16205 at 380.572 kb on - strand, within CSW01_16205 at 380.923 kb on + strand at 381.020 kb on - strand, within CSW01_16210 at 381.102 kb on + strand, within CSW01_16210 at 381.470 kb on + strand at 381.612 kb on + strand, within CSW01_16215 at 381.713 kb on - strand, within CSW01_16215
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 379,389 - +0.5 379,523 + -1.5 379,523 + +0.6 379,574 - +1.5 379,579 + -1.8 379,585 - -1.5 379,589 + -1.1 379,597 + -0.8 379,597 + +0.5 379,597 - -3.6 379,605 + +0.1 379,605 - -0.9 379,605 - +0.4 379,607 - -2.7 379,613 - -1.6 379,813 - CSW01_16200 0.32 +0.6 379,827 + CSW01_16200 0.35 +0.7 379,827 + CSW01_16200 0.35 -0.7 379,859 + CSW01_16200 0.39 +0.6 379,871 + CSW01_16200 0.41 -1.1 379,871 - CSW01_16200 0.41 -0.1 379,873 + CSW01_16200 0.42 -2.8 379,879 - CSW01_16200 0.43 +0.1 379,900 + CSW01_16200 0.46 -2.9 379,997 + CSW01_16200 0.61 +0.0 380,053 + CSW01_16200 0.69 -0.1 380,062 + CSW01_16200 0.70 -1.8 380,062 + CSW01_16200 0.70 +0.0 380,070 - CSW01_16200 0.72 +0.7 380,070 - CSW01_16200 0.72 -2.2 380,111 - CSW01_16200 0.78 +0.3 380,119 + CSW01_16200 0.79 -0.7 380,119 + CSW01_16200 0.79 -0.1 380,119 + CSW01_16200 0.79 -1.1 380,119 + CSW01_16200 0.79 +1.2 380,119 + CSW01_16200 0.79 +0.4 380,127 - CSW01_16200 0.80 +0.9 380,127 - CSW01_16200 0.80 -0.9 380,127 - CSW01_16200 0.80 +0.4 380,127 - CSW01_16200 0.80 -1.6 380,127 - CSW01_16200 0.80 -0.7 380,127 - CSW01_16200 0.80 -1.8 380,127 - CSW01_16200 0.80 -0.8 380,153 + CSW01_16200 0.84 -1.9 380,153 + CSW01_16200 0.84 +0.4 380,154 - CSW01_16200 0.85 +0.2 380,202 - -1.4 380,239 - -0.9 380,245 - -3.0 380,269 - +0.0 380,269 - -0.1 380,515 + CSW01_16205 0.32 -1.0 380,522 + CSW01_16205 0.34 -0.5 380,522 + CSW01_16205 0.34 +1.0 380,530 + CSW01_16205 0.35 -1.4 380,549 + CSW01_16205 0.40 -1.9 380,572 - CSW01_16205 0.45 -2.2 380,923 + +1.3 381,020 - CSW01_16210 0.15 +1.8 381,102 + CSW01_16210 0.38 -0.1 381,470 + +0.8 381,612 + CSW01_16215 0.32 -1.7 381,713 - CSW01_16215 0.63 -0.8
Or see this region's nucleotide sequence