Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15800 and CSW01_15805 are separated by 194 nucleotides CSW01_15805 and CSW01_15810 are separated by 64 nucleotides CSW01_15810 and CSW01_15815 are separated by 192 nucleotides CSW01_15815 and CSW01_15820 are separated by 93 nucleotides CSW01_15820 and CSW01_15825 are separated by 199 nucleotides
CSW01_15800: CSW01_15800 - damage-inducible protein J, at 341,698 to 341,982
_15800
CSW01_15805: CSW01_15805 - lipocalin, at 342,177 to 342,692
_15805
CSW01_15810: CSW01_15810 - hypothetical protein, at 342,757 to 343,353
_15810
CSW01_15815: CSW01_15815 - general secretion pathway protein GspI, at 343,546 to 343,650
_15815
CSW01_15820: CSW01_15820 - DUF645 domain-containing protein, at 343,744 to 343,926
_15820
CSW01_15825: CSW01_15825 - hypothetical protein, at 344,126 to 344,599
_15825
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 342.813 kb on + strand at 342.876 kb on - strand, within CSW01_15810 at 343.242 kb on + strand, within CSW01_15810 at 343.275 kb on + strand, within CSW01_15810 at 343.275 kb on + strand, within CSW01_15810 at 343.301 kb on - strand at 343.406 kb on + strand at 344.149 kb on + strand at 344.152 kb on - strand at 344.260 kb on + strand, within CSW01_15825 at 344.260 kb on + strand, within CSW01_15825 at 344.268 kb on - strand, within CSW01_15825 at 344.268 kb on - strand, within CSW01_15825 at 344.268 kb on - strand, within CSW01_15825 at 344.268 kb on - strand, within CSW01_15825 at 344.268 kb on - strand, within CSW01_15825
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 342,813 + -0.6 342,876 - CSW01_15810 0.20 -2.0 343,242 + CSW01_15810 0.81 -0.2 343,275 + CSW01_15810 0.87 +0.0 343,275 + CSW01_15810 0.87 -3.0 343,301 - +0.7 343,406 + +0.5 344,149 + -2.7 344,152 - -0.4 344,260 + CSW01_15825 0.28 -0.2 344,260 + CSW01_15825 0.28 -2.3 344,268 - CSW01_15825 0.30 -2.0 344,268 - CSW01_15825 0.30 +0.2 344,268 - CSW01_15825 0.30 +1.6 344,268 - CSW01_15825 0.30 -1.5 344,268 - CSW01_15825 0.30 +0.8
Or see this region's nucleotide sequence