Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15690 and CSW01_15695 overlap by 2 nucleotides CSW01_15695 and CSW01_15700 overlap by 32 nucleotides CSW01_15700 and CSW01_15705 overlap by 4 nucleotides CSW01_15705 and CSW01_15710 overlap by 11 nucleotides CSW01_15710 and CSW01_15715 are separated by 60 nucleotides CSW01_15715 and CSW01_15720 are separated by 215 nucleotides
CSW01_15690: CSW01_15690 - CopG family transcriptional regulator, at 332,386 to 332,631
_15690
CSW01_15695: CSW01_15695 - DUF3265 domain-containing protein, at 332,630 to 332,746
_15695
CSW01_15700: CSW01_15700 - hypothetical protein, at 332,715 to 333,521
_15700
CSW01_15705: CSW01_15705 - DUF3265 domain-containing protein, at 333,518 to 333,634
_15705
CSW01_15710: CSW01_15710 - general secretion pathway protein GspI, at 333,624 to 333,752
_15710
CSW01_15715: CSW01_15715 - DUF645 domain-containing protein, at 333,813 to 333,995
_15715
CSW01_15720: CSW01_15720 - LD-carboxypeptidase, at 334,211 to 335,215
_15720
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 332.707 kb on + strand, within CSW01_15695 at 332.707 kb on + strand, within CSW01_15695 at 332.739 kb on + strand at 332.742 kb on - strand at 332.759 kb on - strand at 332.905 kb on + strand, within CSW01_15700 at 332.906 kb on - strand, within CSW01_15700 at 332.906 kb on - strand, within CSW01_15700 at 332.906 kb on - strand, within CSW01_15700 at 332.917 kb on + strand, within CSW01_15700 at 332.922 kb on + strand, within CSW01_15700 at 333.097 kb on + strand, within CSW01_15700 at 333.110 kb on + strand, within CSW01_15700 at 333.163 kb on + strand, within CSW01_15700 at 333.192 kb on - strand, within CSW01_15700 at 333.193 kb on - strand, within CSW01_15700 at 333.195 kb on + strand, within CSW01_15700 at 333.205 kb on + strand, within CSW01_15700 at 333.205 kb on + strand, within CSW01_15700 at 333.213 kb on - strand, within CSW01_15700 at 333.359 kb on - strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.385 kb on + strand, within CSW01_15700 at 333.393 kb on - strand, within CSW01_15700 at 333.470 kb on + strand at 333.478 kb on - strand at 333.485 kb on + strand at 333.486 kb on + strand at 333.486 kb on + strand at 333.501 kb on + strand at 333.540 kb on - strand, within CSW01_15705 at 333.601 kb on - strand, within CSW01_15705 at 334.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 332,707 + CSW01_15695 0.66 -2.3 332,707 + CSW01_15695 0.66 +1.2 332,739 + +0.2 332,742 - -0.6 332,759 - +1.7 332,905 + CSW01_15700 0.24 -3.1 332,906 - CSW01_15700 0.24 -2.2 332,906 - CSW01_15700 0.24 -1.8 332,906 - CSW01_15700 0.24 +1.2 332,917 + CSW01_15700 0.25 -0.2 332,922 + CSW01_15700 0.26 +0.6 333,097 + CSW01_15700 0.47 -0.6 333,110 + CSW01_15700 0.49 +0.8 333,163 + CSW01_15700 0.56 +0.2 333,192 - CSW01_15700 0.59 +0.8 333,193 - CSW01_15700 0.59 +0.5 333,195 + CSW01_15700 0.59 -0.5 333,205 + CSW01_15700 0.61 +0.6 333,205 + CSW01_15700 0.61 -3.6 333,213 - CSW01_15700 0.62 +1.0 333,359 - CSW01_15700 0.80 -0.9 333,385 + CSW01_15700 0.83 -1.6 333,385 + CSW01_15700 0.83 -0.1 333,385 + CSW01_15700 0.83 -0.1 333,385 + CSW01_15700 0.83 -0.8 333,385 + CSW01_15700 0.83 +0.1 333,385 + CSW01_15700 0.83 -1.5 333,385 + CSW01_15700 0.83 -0.3 333,385 + CSW01_15700 0.83 -1.1 333,393 - CSW01_15700 0.84 +0.3 333,470 + -1.2 333,478 - -0.3 333,485 + -0.9 333,486 + -2.6 333,486 + +1.3 333,501 + -1.7 333,540 - CSW01_15705 0.19 -1.8 333,601 - CSW01_15705 0.71 -0.8 334,227 - -2.1
Or see this region's nucleotide sequence