Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15680

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15670 and CSW01_15675 are separated by 127 nucleotidesCSW01_15675 and CSW01_15680 overlap by 11 nucleotidesCSW01_15680 and CSW01_15685 are separated by 66 nucleotidesCSW01_15685 and CSW01_15690 overlap by 14 nucleotidesCSW01_15690 and CSW01_15695 overlap by 2 nucleotidesCSW01_15695 and CSW01_15700 overlap by 32 nucleotides CSW01_15670: CSW01_15670 - peroxiredoxin, at 330,670 to 331,158 _15670 CSW01_15675: CSW01_15675 - hypothetical protein, at 331,286 to 331,948 _15675 CSW01_15680: CSW01_15680 - DUF3265 domain-containing protein, at 331,938 to 332,066 _15680 CSW01_15685: CSW01_15685 - toxin, at 332,133 to 332,399 _15685 CSW01_15690: CSW01_15690 - CopG family transcriptional regulator, at 332,386 to 332,631 _15690 CSW01_15695: CSW01_15695 - DUF3265 domain-containing protein, at 332,630 to 332,746 _15695 CSW01_15700: CSW01_15700 - hypothetical protein, at 332,715 to 333,521 _15700 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 331.002 kb on - strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.069 kb on - strand, within CSW01_15670at 331.071 kb on + strand, within CSW01_15670at 331.281 kb on - strandat 331.431 kb on + strand, within CSW01_15675at 331.431 kb on + strand, within CSW01_15675at 331.431 kb on + strand, within CSW01_15675at 331.439 kb on - strand, within CSW01_15675at 331.439 kb on - strand, within CSW01_15675at 331.444 kb on + strand, within CSW01_15675at 331.452 kb on - strand, within CSW01_15675at 331.485 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.532 kb on + strand, within CSW01_15675at 331.532 kb on - strand, within CSW01_15675at 331.532 kb on - strand, within CSW01_15675at 331.540 kb on + strand, within CSW01_15675at 331.548 kb on - strand, within CSW01_15675at 331.656 kb on + strand, within CSW01_15675at 331.729 kb on + strand, within CSW01_15675at 331.734 kb on + strand, within CSW01_15675at 331.737 kb on - strand, within CSW01_15675at 331.742 kb on - strand, within CSW01_15675at 331.752 kb on - strand, within CSW01_15675at 331.757 kb on - strand, within CSW01_15675at 331.762 kb on - strand, within CSW01_15675at 331.797 kb on + strand, within CSW01_15675at 331.804 kb on - strand, within CSW01_15675at 331.824 kb on + strand, within CSW01_15675at 331.832 kb on - strand, within CSW01_15675at 331.884 kb on + strandat 331.898 kb on + strandat 331.906 kb on - strandat 332.025 kb on + strand, within CSW01_15680at 332.039 kb on + strand, within CSW01_15680at 332.047 kb on - strand, within CSW01_15680at 332.067 kb on - strandat 332.205 kb on + strand, within CSW01_15685at 332.211 kb on + strand, within CSW01_15685at 332.213 kb on - strand, within CSW01_15685at 332.313 kb on - strand, within CSW01_15685at 332.347 kb on + strand, within CSW01_15685at 332.707 kb on + strand, within CSW01_15695at 332.707 kb on + strand, within CSW01_15695at 332.739 kb on + strandat 332.742 kb on - strandat 332.759 kb on - strandat 332.905 kb on + strand, within CSW01_15700at 332.906 kb on - strand, within CSW01_15700at 332.906 kb on - strand, within CSW01_15700at 332.906 kb on - strand, within CSW01_15700at 332.917 kb on + strand, within CSW01_15700at 332.922 kb on + strand, within CSW01_15700

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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330,994 + CSW01_15670 0.66 +0.7
330,994 + CSW01_15670 0.66 +0.1
330,994 + CSW01_15670 0.66 -0.2
330,994 + CSW01_15670 0.66 +2.9
330,994 + CSW01_15670 0.66 -0.0
331,002 - CSW01_15670 0.68 +0.2
331,061 + CSW01_15670 0.80 -2.5
331,061 + CSW01_15670 0.80 +0.4
331,061 + CSW01_15670 0.80 +1.4
331,061 + CSW01_15670 0.80 -0.3
331,061 + CSW01_15670 0.80 -1.8
331,061 + CSW01_15670 0.80 -1.1
331,069 - CSW01_15670 0.82 -2.5
331,071 + CSW01_15670 0.82 -0.1
331,281 - +0.6
331,431 + CSW01_15675 0.22 -2.0
331,431 + CSW01_15675 0.22 -0.7
331,431 + CSW01_15675 0.22 -1.1
331,439 - CSW01_15675 0.23 +0.9
331,439 - CSW01_15675 0.23 +0.1
331,444 + CSW01_15675 0.24 -0.9
331,452 - CSW01_15675 0.25 +0.4
331,485 + CSW01_15675 0.30 +0.4
331,490 + CSW01_15675 0.31 +1.7
331,490 + CSW01_15675 0.31 -0.3
331,490 + CSW01_15675 0.31 -0.4
331,490 + CSW01_15675 0.31 +0.5
331,490 + CSW01_15675 0.31 -0.7
331,498 - CSW01_15675 0.32 -2.9
331,498 - CSW01_15675 0.32 -1.0
331,498 - CSW01_15675 0.32 -3.3
331,498 - CSW01_15675 0.32 +2.2
331,498 - CSW01_15675 0.32 -1.2
331,498 - CSW01_15675 0.32 +0.5
331,498 - CSW01_15675 0.32 +0.7
331,498 - CSW01_15675 0.32 -0.2
331,498 - CSW01_15675 0.32 +0.1
331,532 + CSW01_15675 0.37 -0.6
331,532 - CSW01_15675 0.37 -1.1
331,532 - CSW01_15675 0.37 -1.2
331,540 + CSW01_15675 0.38 -2.6
331,548 - CSW01_15675 0.40 +0.5
331,656 + CSW01_15675 0.56 +1.1
331,729 + CSW01_15675 0.67 +0.4
331,734 + CSW01_15675 0.68 +0.4
331,737 - CSW01_15675 0.68 +0.8
331,742 - CSW01_15675 0.69 -1.5
331,752 - CSW01_15675 0.70 -0.8
331,757 - CSW01_15675 0.71 +0.3
331,762 - CSW01_15675 0.72 -2.3
331,797 + CSW01_15675 0.77 +0.3
331,804 - CSW01_15675 0.78 +0.3
331,824 + CSW01_15675 0.81 +0.2
331,832 - CSW01_15675 0.82 -2.7
331,884 + +0.6
331,898 + +2.0
331,906 - -2.6
332,025 + CSW01_15680 0.67 -0.3
332,039 + CSW01_15680 0.78 -1.3
332,047 - CSW01_15680 0.84 -3.2
332,067 - +0.7
332,205 + CSW01_15685 0.27 -0.5
332,211 + CSW01_15685 0.29 -0.1
332,213 - CSW01_15685 0.30 +0.7
332,313 - CSW01_15685 0.67 -1.7
332,347 + CSW01_15685 0.80 +0.1
332,707 + CSW01_15695 0.66 -2.3
332,707 + CSW01_15695 0.66 +1.2
332,739 + +0.2
332,742 - -0.6
332,759 - +1.7
332,905 + CSW01_15700 0.24 -3.1
332,906 - CSW01_15700 0.24 -2.2
332,906 - CSW01_15700 0.24 -1.8
332,906 - CSW01_15700 0.24 +1.2
332,917 + CSW01_15700 0.25 -0.2
332,922 + CSW01_15700 0.26 +0.6

Or see this region's nucleotide sequence