Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15170

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15160 and CSW01_15165 overlap by 20 nucleotidesCSW01_15165 and CSW01_15170 are separated by 2 nucleotidesCSW01_15170 and CSW01_15175 overlap by 41 nucleotidesCSW01_15175 and CSW01_15180 are separated by 11 nucleotides CSW01_15160: CSW01_15160 - sensor histidine kinase, at 258,738 to 260,387 _15160 CSW01_15165: CSW01_15165 - DNA-binding response regulator, at 260,368 to 261,042 _15165 CSW01_15170: CSW01_15170 - hypothetical protein, at 261,045 to 261,674 _15170 CSW01_15175: CSW01_15175 - xylulose 5-phosphate 3-epimerase, at 261,634 to 262,518 _15175 CSW01_15180: CSW01_15180 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 262,530 to 263,177 _15180 Position (kb) 261 262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 260.063 kb on + strand, within CSW01_15160at 260.103 kb on + strand, within CSW01_15160at 260.118 kb on - strand, within CSW01_15160at 260.129 kb on + strand, within CSW01_15160at 260.129 kb on + strand, within CSW01_15160at 260.137 kb on - strand, within CSW01_15160at 260.241 kb on + strandat 260.537 kb on - strand, within CSW01_15165at 260.543 kb on + strand, within CSW01_15165at 260.543 kb on + strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.584 kb on + strand, within CSW01_15165at 260.590 kb on + strand, within CSW01_15165at 260.672 kb on - strand, within CSW01_15165at 260.672 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.733 kb on - strand, within CSW01_15165at 260.923 kb on + strand, within CSW01_15165at 261.005 kb on - strandat 261.020 kb on - strandat 261.029 kb on - strandat 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.132 kb on - strand, within CSW01_15170at 261.269 kb on + strand, within CSW01_15170at 261.276 kb on + strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.284 kb on - strand, within CSW01_15170at 261.309 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.379 kb on - strand, within CSW01_15170at 261.426 kb on - strand, within CSW01_15170at 261.430 kb on + strand, within CSW01_15170at 261.438 kb on - strand, within CSW01_15170at 261.445 kb on + strand, within CSW01_15170at 261.455 kb on + strand, within CSW01_15170at 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.632 kb on - strandat 261.632 kb on - strandat 261.632 kb on - strandat 261.703 kb on + strandat 261.709 kb on - strandat 261.709 kb on - strandat 261.747 kb on - strand, within CSW01_15175at 261.761 kb on + strand, within CSW01_15175at 261.764 kb on - strand, within CSW01_15175at 261.769 kb on - strand, within CSW01_15175at 261.784 kb on + strand, within CSW01_15175at 261.861 kb on + strand, within CSW01_15175at 261.869 kb on - strand, within CSW01_15175at 261.869 kb on - strand, within CSW01_15175at 261.891 kb on - strand, within CSW01_15175at 261.965 kb on - strand, within CSW01_15175at 262.013 kb on - strand, within CSW01_15175at 262.013 kb on - strand, within CSW01_15175at 262.029 kb on + strand, within CSW01_15175at 262.037 kb on - strand, within CSW01_15175at 262.060 kb on + strand, within CSW01_15175at 262.093 kb on + strand, within CSW01_15175at 262.210 kb on - strand, within CSW01_15175at 262.280 kb on + strand, within CSW01_15175at 262.310 kb on + strand, within CSW01_15175at 262.337 kb on + strand, within CSW01_15175at 262.425 kb on + strand, within CSW01_15175at 262.433 kb on - strandat 262.566 kb on - strandat 262.641 kb on - strand, within CSW01_15180

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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260,063 + CSW01_15160 0.80 -2.3
260,103 + CSW01_15160 0.83 -1.0
260,118 - CSW01_15160 0.84 -1.9
260,129 + CSW01_15160 0.84 -0.8
260,129 + CSW01_15160 0.84 -0.0
260,137 - CSW01_15160 0.85 +0.7
260,241 + -0.0
260,537 - CSW01_15165 0.25 +1.3
260,543 + CSW01_15165 0.26 +1.8
260,543 + CSW01_15165 0.26 -0.1
260,551 - CSW01_15165 0.27 -0.2
260,551 - CSW01_15165 0.27 -1.2
260,551 - CSW01_15165 0.27 -0.5
260,584 + CSW01_15165 0.32 -0.5
260,590 + CSW01_15165 0.33 -1.2
260,672 - CSW01_15165 0.45 +0.6
260,672 - CSW01_15165 0.45 -2.1
260,708 - CSW01_15165 0.50 +0.1
260,708 - CSW01_15165 0.50 -1.1
260,733 - CSW01_15165 0.54 -0.0
260,923 + CSW01_15165 0.82 -1.3
261,005 - +0.4
261,020 - +0.4
261,029 - -1.8
261,124 + CSW01_15170 0.13 +0.4
261,124 + CSW01_15170 0.13 -0.7
261,124 + CSW01_15170 0.13 -1.5
261,132 - CSW01_15170 0.14 -0.8
261,269 + CSW01_15170 0.36 -0.5
261,276 + CSW01_15170 0.37 +0.5
261,277 - CSW01_15170 0.37 -0.2
261,277 - CSW01_15170 0.37 -3.1
261,284 - CSW01_15170 0.38 -0.0
261,309 - CSW01_15170 0.42 -1.0
261,366 - CSW01_15170 0.51 -1.5
261,366 - CSW01_15170 0.51 -1.9
261,379 - CSW01_15170 0.53 -1.5
261,426 - CSW01_15170 0.60 +0.4
261,430 + CSW01_15170 0.61 +0.1
261,438 - CSW01_15170 0.62 -2.8
261,445 + CSW01_15170 0.63 +1.1
261,455 + CSW01_15170 0.65 +0.3
261,624 + +0.9
261,624 + +0.0
261,624 + -2.6
261,632 - -3.0
261,632 - +0.9
261,632 - +1.3
261,703 + -0.6
261,709 - -2.2
261,709 - -0.3
261,747 - CSW01_15175 0.13 -3.1
261,761 + CSW01_15175 0.14 -0.8
261,764 - CSW01_15175 0.15 -0.0
261,769 - CSW01_15175 0.15 +1.6
261,784 + CSW01_15175 0.17 -2.1
261,861 + CSW01_15175 0.26 -1.6
261,869 - CSW01_15175 0.27 +1.9
261,869 - CSW01_15175 0.27 -0.1
261,891 - CSW01_15175 0.29 +2.0
261,965 - CSW01_15175 0.37 -0.4
262,013 - CSW01_15175 0.43 +0.9
262,013 - CSW01_15175 0.43 -1.2
262,029 + CSW01_15175 0.45 -2.8
262,037 - CSW01_15175 0.46 -2.5
262,060 + CSW01_15175 0.48 +1.3
262,093 + CSW01_15175 0.52 -2.8
262,210 - CSW01_15175 0.65 -1.6
262,280 + CSW01_15175 0.73 -0.4
262,310 + CSW01_15175 0.76 -1.2
262,337 + CSW01_15175 0.79 +1.4
262,425 + CSW01_15175 0.89 -3.9
262,433 - -0.5
262,566 - -1.0
262,641 - CSW01_15180 0.17 -0.4

Or see this region's nucleotide sequence