Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15095 and CSW01_15100 are separated by 84 nucleotides CSW01_15100 and CSW01_15105 are separated by 553 nucleotides
CSW01_15095: CSW01_15095 - protease, at 243,981 to 246,737
_15095
CSW01_15100: CSW01_15100 - hypothetical protein, at 246,822 to 247,127
_15100
CSW01_15105: CSW01_15105 - class II glutamine amidotransferase, at 247,681 to 248,445
_15105
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 245.870 kb on + strand, within CSW01_15095 at 245.878 kb on - strand, within CSW01_15095 at 246.043 kb on - strand, within CSW01_15095 at 246.086 kb on - strand, within CSW01_15095 at 246.091 kb on - strand, within CSW01_15095 at 246.091 kb on - strand, within CSW01_15095 at 246.128 kb on - strand, within CSW01_15095 at 246.156 kb on + strand, within CSW01_15095 at 246.184 kb on + strand, within CSW01_15095 at 246.192 kb on - strand, within CSW01_15095 at 246.192 kb on - strand, within CSW01_15095 at 246.252 kb on + strand, within CSW01_15095 at 246.252 kb on + strand, within CSW01_15095 at 246.253 kb on + strand, within CSW01_15095 at 246.253 kb on + strand, within CSW01_15095 at 246.260 kb on - strand, within CSW01_15095 at 246.260 kb on - strand, within CSW01_15095 at 246.260 kb on - strand, within CSW01_15095 at 246.647 kb on + strand at 246.648 kb on + strand at 246.656 kb on - strand at 246.656 kb on - strand at 246.807 kb on - strand at 246.844 kb on - strand at 246.872 kb on - strand, within CSW01_15100 at 246.872 kb on - strand, within CSW01_15100 at 246.882 kb on + strand, within CSW01_15100 at 246.883 kb on - strand, within CSW01_15100 at 246.929 kb on + strand, within CSW01_15100 at 246.970 kb on - strand, within CSW01_15100 at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.464 kb on + strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.472 kb on - strand at 247.489 kb on + strand at 247.489 kb on + strand at 247.489 kb on + strand at 247.490 kb on + strand at 247.492 kb on - strand at 247.498 kb on - strand at 247.498 kb on - strand at 247.502 kb on - strand at 247.529 kb on - strand at 247.574 kb on + strand at 247.582 kb on - strand at 247.582 kb on - strand at 247.582 kb on - strand at 247.622 kb on + strand at 247.622 kb on + strand at 247.622 kb on + strand at 247.622 kb on + strand at 247.630 kb on - strand at 247.630 kb on - strand at 247.630 kb on - strand at 247.630 kb on - strand at 247.724 kb on + strand at 247.724 kb on + strand at 247.732 kb on - strand at 247.772 kb on + strand, within CSW01_15105 at 247.772 kb on + strand, within CSW01_15105 at 247.780 kb on - strand, within CSW01_15105 at 247.780 kb on - strand, within CSW01_15105 at 247.790 kb on - strand, within CSW01_15105 at 247.833 kb on - strand, within CSW01_15105 at 247.875 kb on - strand, within CSW01_15105 at 247.936 kb on - strand, within CSW01_15105 at 247.974 kb on - strand, within CSW01_15105 at 248.010 kb on - strand, within CSW01_15105 at 248.045 kb on - strand, within CSW01_15105
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 245,870 + CSW01_15095 0.69 -3.0 245,878 - CSW01_15095 0.69 +2.3 246,043 - CSW01_15095 0.75 -1.1 246,086 - CSW01_15095 0.76 +0.9 246,091 - CSW01_15095 0.77 -2.3 246,091 - CSW01_15095 0.77 -0.8 246,128 - CSW01_15095 0.78 -0.4 246,156 + CSW01_15095 0.79 -0.3 246,184 + CSW01_15095 0.80 +1.1 246,192 - CSW01_15095 0.80 -2.0 246,192 - CSW01_15095 0.80 +0.2 246,252 + CSW01_15095 0.82 +1.1 246,252 + CSW01_15095 0.82 +0.2 246,253 + CSW01_15095 0.82 -1.3 246,253 + CSW01_15095 0.82 -1.0 246,260 - CSW01_15095 0.83 -0.5 246,260 - CSW01_15095 0.83 +0.2 246,260 - CSW01_15095 0.83 -1.5 246,647 + -0.1 246,648 + -2.0 246,656 - +0.3 246,656 - -1.1 246,807 - -1.6 246,844 - -0.1 246,872 - CSW01_15100 0.16 -0.9 246,872 - CSW01_15100 0.16 +0.6 246,882 + CSW01_15100 0.20 -1.3 246,883 - CSW01_15100 0.20 +2.0 246,929 + CSW01_15100 0.35 +1.6 246,970 - CSW01_15100 0.48 +0.1 247,464 + +0.1 247,464 + +0.4 247,464 + -0.1 247,464 + +0.4 247,464 + -2.5 247,464 + -0.5 247,464 + +0.7 247,464 + -1.9 247,464 + -2.1 247,464 + +3.0 247,472 - +0.7 247,472 - +1.0 247,472 - +1.9 247,472 - +0.8 247,472 - -2.3 247,472 - -2.2 247,472 - +0.2 247,472 - +1.0 247,472 - -0.5 247,472 - -0.6 247,489 + -0.7 247,489 + +0.5 247,489 + +2.0 247,490 + -1.1 247,492 - +4.3 247,498 - +1.2 247,498 - +1.1 247,502 - -2.7 247,529 - +2.3 247,574 + +0.7 247,582 - -0.0 247,582 - +0.4 247,582 - +0.5 247,622 + -0.7 247,622 + -1.2 247,622 + -2.1 247,622 + +0.8 247,630 - -0.0 247,630 - -1.0 247,630 - +0.8 247,630 - -0.4 247,724 + +0.9 247,724 + +0.1 247,732 - +0.5 247,772 + CSW01_15105 0.12 -1.0 247,772 + CSW01_15105 0.12 -0.5 247,780 - CSW01_15105 0.13 +0.6 247,780 - CSW01_15105 0.13 -1.8 247,790 - CSW01_15105 0.14 -1.2 247,833 - CSW01_15105 0.20 -2.4 247,875 - CSW01_15105 0.25 -0.9 247,936 - CSW01_15105 0.33 +0.1 247,974 - CSW01_15105 0.38 +1.6 248,010 - CSW01_15105 0.43 -2.3 248,045 - CSW01_15105 0.48 +0.8
Or see this region's nucleotide sequence