Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14775 and CSW01_14780 overlap by 4 nucleotides CSW01_14780 and CSW01_14785 overlap by 1 nucleotides
CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609
_14775
CSW01_14780: CSW01_14780 - cation:proton antiporter, at 172,606 to 172,959
_14780
CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634
_14785
Position (kb)
172
173 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 171.644 kb on + strand, within CSW01_14775 at 171.746 kb on + strand, within CSW01_14775 at 171.754 kb on - strand, within CSW01_14775 at 171.812 kb on - strand, within CSW01_14775 at 171.828 kb on + strand, within CSW01_14775 at 171.905 kb on + strand, within CSW01_14775 at 171.971 kb on + strand, within CSW01_14775 at 171.982 kb on - strand, within CSW01_14775 at 171.993 kb on + strand, within CSW01_14775 at 172.028 kb on + strand, within CSW01_14775 at 172.051 kb on - strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.070 kb on - strand, within CSW01_14775 at 172.213 kb on - strand, within CSW01_14775 at 172.243 kb on + strand, within CSW01_14775 at 172.253 kb on + strand, within CSW01_14775 at 172.256 kb on - strand, within CSW01_14775 at 172.265 kb on + strand, within CSW01_14775 at 172.281 kb on - strand, within CSW01_14775 at 172.356 kb on + strand, within CSW01_14775 at 172.423 kb on - strand, within CSW01_14775 at 172.434 kb on - strand, within CSW01_14775 at 172.507 kb on + strand at 172.574 kb on + strand at 172.589 kb on + strand at 172.597 kb on - strand at 172.597 kb on - strand at 172.617 kb on + strand at 172.632 kb on + strand at 172.771 kb on + strand, within CSW01_14780 at 172.804 kb on + strand, within CSW01_14780 at 172.804 kb on + strand, within CSW01_14780 at 172.845 kb on + strand, within CSW01_14780 at 172.868 kb on - strand, within CSW01_14780 at 172.997 kb on + strand at 173.000 kb on - strand at 173.000 kb on - strand at 173.100 kb on - strand at 173.131 kb on - strand at 173.150 kb on + strand at 173.164 kb on + strand at 173.172 kb on + strand at 173.180 kb on - strand at 173.219 kb on + strand at 173.224 kb on + strand at 173.264 kb on - strand, within CSW01_14785 at 173.285 kb on + strand, within CSW01_14785 at 173.293 kb on - strand, within CSW01_14785 at 173.298 kb on - strand, within CSW01_14785 at 173.309 kb on + strand, within CSW01_14785 at 173.320 kb on + strand, within CSW01_14785 at 173.330 kb on + strand, within CSW01_14785 at 173.557 kb on + strand, within CSW01_14785 at 173.557 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.609 kb on - strand, within CSW01_14785 at 173.630 kb on + strand, within CSW01_14785 at 173.630 kb on + strand, within CSW01_14785 at 173.638 kb on - strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.740 kb on - strand, within CSW01_14785 at 173.765 kb on - strand, within CSW01_14785 at 173.765 kb on - strand, within CSW01_14785 at 173.794 kb on + strand, within CSW01_14785 at 173.830 kb on - strand, within CSW01_14785 at 173.832 kb on - strand, within CSW01_14785 at 173.832 kb on - strand, within CSW01_14785 at 173.847 kb on - strand, within CSW01_14785 at 173.943 kb on + strand, within CSW01_14785
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 171,644 + CSW01_14775 0.35 -2.5 171,746 + CSW01_14775 0.42 +0.9 171,754 - CSW01_14775 0.43 +0.8 171,812 - CSW01_14775 0.47 -0.4 171,828 + CSW01_14775 0.48 +0.2 171,905 + CSW01_14775 0.53 -3.8 171,971 + CSW01_14775 0.57 -0.4 171,982 - CSW01_14775 0.58 +0.1 171,993 + CSW01_14775 0.59 -3.1 172,028 + CSW01_14775 0.61 -2.0 172,051 - CSW01_14775 0.63 +0.2 172,062 + CSW01_14775 0.63 -2.9 172,062 + CSW01_14775 0.63 +0.9 172,070 - CSW01_14775 0.64 +0.3 172,213 - CSW01_14775 0.73 -0.0 172,243 + CSW01_14775 0.75 -1.3 172,253 + CSW01_14775 0.76 +0.5 172,256 - CSW01_14775 0.76 +0.5 172,265 + CSW01_14775 0.77 -0.6 172,281 - CSW01_14775 0.78 -1.9 172,356 + CSW01_14775 0.83 -0.1 172,423 - CSW01_14775 0.88 +0.7 172,434 - CSW01_14775 0.88 +0.7 172,507 + +0.6 172,574 + +0.0 172,589 + +1.2 172,597 - -2.0 172,597 - +0.4 172,617 + -1.7 172,632 + -2.4 172,771 + CSW01_14780 0.47 -2.6 172,804 + CSW01_14780 0.56 -2.4 172,804 + CSW01_14780 0.56 -2.1 172,845 + CSW01_14780 0.68 +0.6 172,868 - CSW01_14780 0.74 -3.4 172,997 + -2.2 173,000 - -0.9 173,000 - +0.6 173,100 - +0.1 173,131 - -0.1 173,150 + +1.1 173,164 + +0.8 173,172 + -0.3 173,180 - -1.5 173,219 + +0.4 173,224 + +0.2 173,264 - CSW01_14785 0.11 -0.0 173,285 + CSW01_14785 0.12 -1.3 173,293 - CSW01_14785 0.12 +0.1 173,298 - CSW01_14785 0.13 -1.0 173,309 + CSW01_14785 0.13 +1.0 173,320 + CSW01_14785 0.13 +0.6 173,330 + CSW01_14785 0.14 -1.0 173,557 + CSW01_14785 0.22 +0.5 173,557 + CSW01_14785 0.22 -1.0 173,570 + CSW01_14785 0.23 -3.4 173,570 + CSW01_14785 0.23 -0.6 173,570 + CSW01_14785 0.23 -1.7 173,570 + CSW01_14785 0.23 +0.3 173,570 + CSW01_14785 0.23 +1.1 173,578 - CSW01_14785 0.23 +0.4 173,578 - CSW01_14785 0.23 +1.1 173,578 - CSW01_14785 0.23 -0.5 173,578 - CSW01_14785 0.23 -3.3 173,578 - CSW01_14785 0.23 -1.5 173,578 - CSW01_14785 0.23 -0.4 173,609 - CSW01_14785 0.24 -0.5 173,630 + CSW01_14785 0.25 +0.6 173,630 + CSW01_14785 0.25 +0.2 173,638 - CSW01_14785 0.25 +1.0 173,732 + CSW01_14785 0.29 -2.7 173,732 + CSW01_14785 0.29 +0.1 173,732 + CSW01_14785 0.29 -1.2 173,740 - CSW01_14785 0.29 -0.6 173,765 - CSW01_14785 0.30 +1.3 173,765 - CSW01_14785 0.30 -0.6 173,794 + CSW01_14785 0.31 -0.9 173,830 - CSW01_14785 0.33 -2.0 173,832 - CSW01_14785 0.33 +0.1 173,832 - CSW01_14785 0.33 +0.9 173,847 - CSW01_14785 0.33 +0.3 173,943 + CSW01_14785 0.37 +0.4
Or see this region's nucleotide sequence