Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14780

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14775 and CSW01_14780 overlap by 4 nucleotidesCSW01_14780 and CSW01_14785 overlap by 1 nucleotides CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609 _14775 CSW01_14780: CSW01_14780 - cation:proton antiporter, at 172,606 to 172,959 _14780 CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634 _14785 Position (kb) 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 171.644 kb on + strand, within CSW01_14775at 171.746 kb on + strand, within CSW01_14775at 171.754 kb on - strand, within CSW01_14775at 171.812 kb on - strand, within CSW01_14775at 171.828 kb on + strand, within CSW01_14775at 171.905 kb on + strand, within CSW01_14775at 171.971 kb on + strand, within CSW01_14775at 171.982 kb on - strand, within CSW01_14775at 171.993 kb on + strand, within CSW01_14775at 172.028 kb on + strand, within CSW01_14775at 172.051 kb on - strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.070 kb on - strand, within CSW01_14775at 172.213 kb on - strand, within CSW01_14775at 172.243 kb on + strand, within CSW01_14775at 172.253 kb on + strand, within CSW01_14775at 172.256 kb on - strand, within CSW01_14775at 172.265 kb on + strand, within CSW01_14775at 172.281 kb on - strand, within CSW01_14775at 172.356 kb on + strand, within CSW01_14775at 172.423 kb on - strand, within CSW01_14775at 172.434 kb on - strand, within CSW01_14775at 172.507 kb on + strandat 172.574 kb on + strandat 172.589 kb on + strandat 172.597 kb on - strandat 172.597 kb on - strandat 172.617 kb on + strandat 172.632 kb on + strandat 172.771 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.845 kb on + strand, within CSW01_14780at 172.868 kb on - strand, within CSW01_14780at 172.997 kb on + strandat 173.000 kb on - strandat 173.000 kb on - strandat 173.100 kb on - strandat 173.131 kb on - strandat 173.150 kb on + strandat 173.164 kb on + strandat 173.172 kb on + strandat 173.180 kb on - strandat 173.219 kb on + strandat 173.224 kb on + strandat 173.264 kb on - strand, within CSW01_14785at 173.285 kb on + strand, within CSW01_14785at 173.293 kb on - strand, within CSW01_14785at 173.298 kb on - strand, within CSW01_14785at 173.309 kb on + strand, within CSW01_14785at 173.320 kb on + strand, within CSW01_14785at 173.330 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.609 kb on - strand, within CSW01_14785at 173.630 kb on + strand, within CSW01_14785at 173.630 kb on + strand, within CSW01_14785at 173.638 kb on - strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.740 kb on - strand, within CSW01_14785at 173.765 kb on - strand, within CSW01_14785at 173.765 kb on - strand, within CSW01_14785at 173.794 kb on + strand, within CSW01_14785at 173.830 kb on - strand, within CSW01_14785at 173.832 kb on - strand, within CSW01_14785at 173.832 kb on - strand, within CSW01_14785at 173.847 kb on - strand, within CSW01_14785at 173.943 kb on + strand, within CSW01_14785

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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171,644 + CSW01_14775 0.35 -2.5
171,746 + CSW01_14775 0.42 +0.9
171,754 - CSW01_14775 0.43 +0.8
171,812 - CSW01_14775 0.47 -0.4
171,828 + CSW01_14775 0.48 +0.2
171,905 + CSW01_14775 0.53 -3.8
171,971 + CSW01_14775 0.57 -0.4
171,982 - CSW01_14775 0.58 +0.1
171,993 + CSW01_14775 0.59 -3.1
172,028 + CSW01_14775 0.61 -2.0
172,051 - CSW01_14775 0.63 +0.2
172,062 + CSW01_14775 0.63 -2.9
172,062 + CSW01_14775 0.63 +0.9
172,070 - CSW01_14775 0.64 +0.3
172,213 - CSW01_14775 0.73 -0.0
172,243 + CSW01_14775 0.75 -1.3
172,253 + CSW01_14775 0.76 +0.5
172,256 - CSW01_14775 0.76 +0.5
172,265 + CSW01_14775 0.77 -0.6
172,281 - CSW01_14775 0.78 -1.9
172,356 + CSW01_14775 0.83 -0.1
172,423 - CSW01_14775 0.88 +0.7
172,434 - CSW01_14775 0.88 +0.7
172,507 + +0.6
172,574 + +0.0
172,589 + +1.2
172,597 - -2.0
172,597 - +0.4
172,617 + -1.7
172,632 + -2.4
172,771 + CSW01_14780 0.47 -2.6
172,804 + CSW01_14780 0.56 -2.4
172,804 + CSW01_14780 0.56 -2.1
172,845 + CSW01_14780 0.68 +0.6
172,868 - CSW01_14780 0.74 -3.4
172,997 + -2.2
173,000 - -0.9
173,000 - +0.6
173,100 - +0.1
173,131 - -0.1
173,150 + +1.1
173,164 + +0.8
173,172 + -0.3
173,180 - -1.5
173,219 + +0.4
173,224 + +0.2
173,264 - CSW01_14785 0.11 -0.0
173,285 + CSW01_14785 0.12 -1.3
173,293 - CSW01_14785 0.12 +0.1
173,298 - CSW01_14785 0.13 -1.0
173,309 + CSW01_14785 0.13 +1.0
173,320 + CSW01_14785 0.13 +0.6
173,330 + CSW01_14785 0.14 -1.0
173,557 + CSW01_14785 0.22 +0.5
173,557 + CSW01_14785 0.22 -1.0
173,570 + CSW01_14785 0.23 -3.4
173,570 + CSW01_14785 0.23 -0.6
173,570 + CSW01_14785 0.23 -1.7
173,570 + CSW01_14785 0.23 +0.3
173,570 + CSW01_14785 0.23 +1.1
173,578 - CSW01_14785 0.23 +0.4
173,578 - CSW01_14785 0.23 +1.1
173,578 - CSW01_14785 0.23 -0.5
173,578 - CSW01_14785 0.23 -3.3
173,578 - CSW01_14785 0.23 -1.5
173,578 - CSW01_14785 0.23 -0.4
173,609 - CSW01_14785 0.24 -0.5
173,630 + CSW01_14785 0.25 +0.6
173,630 + CSW01_14785 0.25 +0.2
173,638 - CSW01_14785 0.25 +1.0
173,732 + CSW01_14785 0.29 -2.7
173,732 + CSW01_14785 0.29 +0.1
173,732 + CSW01_14785 0.29 -1.2
173,740 - CSW01_14785 0.29 -0.6
173,765 - CSW01_14785 0.30 +1.3
173,765 - CSW01_14785 0.30 -0.6
173,794 + CSW01_14785 0.31 -0.9
173,830 - CSW01_14785 0.33 -2.0
173,832 - CSW01_14785 0.33 +0.1
173,832 - CSW01_14785 0.33 +0.9
173,847 - CSW01_14785 0.33 +0.3
173,943 + CSW01_14785 0.37 +0.4

Or see this region's nucleotide sequence