Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14590

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14585 and CSW01_14590 are separated by 2 nucleotidesCSW01_14590 and CSW01_14595 are separated by 25 nucleotides CSW01_14585: CSW01_14585 - type VI secretion system baseplate subunit TssK, at 124,040 to 125,374 _14585 CSW01_14590: CSW01_14590 - type IV secretion protein DotU, at 125,377 to 126,150 _14590 CSW01_14595: CSW01_14595 - type VI secretion system ATPase TssH, at 126,176 to 128,785 _14595 Position (kb) 125 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 124.383 kb on + strand, within CSW01_14585at 124.391 kb on - strand, within CSW01_14585at 124.401 kb on - strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.514 kb on - strand, within CSW01_14585at 124.624 kb on - strand, within CSW01_14585at 124.626 kb on + strand, within CSW01_14585at 124.626 kb on + strand, within CSW01_14585at 124.631 kb on + strand, within CSW01_14585at 124.634 kb on - strand, within CSW01_14585at 124.634 kb on - strand, within CSW01_14585at 124.661 kb on + strand, within CSW01_14585at 124.661 kb on + strand, within CSW01_14585at 124.669 kb on - strand, within CSW01_14585at 124.702 kb on + strand, within CSW01_14585at 124.707 kb on + strand, within CSW01_14585at 124.715 kb on - strand, within CSW01_14585at 124.725 kb on - strand, within CSW01_14585at 124.733 kb on + strand, within CSW01_14585at 124.757 kb on + strand, within CSW01_14585at 124.765 kb on - strand, within CSW01_14585at 124.786 kb on + strand, within CSW01_14585at 124.796 kb on + strand, within CSW01_14585at 124.806 kb on + strand, within CSW01_14585at 124.833 kb on - strand, within CSW01_14585at 124.842 kb on - strand, within CSW01_14585at 124.995 kb on + strand, within CSW01_14585at 125.005 kb on + strand, within CSW01_14585at 125.005 kb on - strand, within CSW01_14585at 125.062 kb on - strand, within CSW01_14585at 125.064 kb on + strand, within CSW01_14585at 125.072 kb on - strand, within CSW01_14585at 125.116 kb on - strand, within CSW01_14585at 125.243 kb on + strandat 125.243 kb on + strandat 125.243 kb on + strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.264 kb on + strandat 125.279 kb on + strandat 125.363 kb on + strandat 125.371 kb on - strandat 125.488 kb on - strand, within CSW01_14590at 125.534 kb on + strand, within CSW01_14590at 125.542 kb on - strand, within CSW01_14590at 125.544 kb on + strand, within CSW01_14590at 125.559 kb on + strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.568 kb on + strand, within CSW01_14590at 125.576 kb on - strand, within CSW01_14590at 125.590 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.817 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.838 kb on - strand, within CSW01_14590at 125.857 kb on + strand, within CSW01_14590at 125.872 kb on + strand, within CSW01_14590at 125.880 kb on - strand, within CSW01_14590at 125.938 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.956 kb on - strand, within CSW01_14590at 125.965 kb on + strand, within CSW01_14590at 125.971 kb on + strand, within CSW01_14590at 125.973 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.990 kb on + strand, within CSW01_14590at 126.097 kb on + strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.145 kb on + strandat 126.181 kb on - strandat 126.188 kb on + strandat 126.258 kb on + strandat 126.274 kb on + strandat 126.324 kb on + strandat 126.402 kb on + strandat 126.403 kb on - strandat 126.403 kb on - strandat 126.508 kb on + strand, within CSW01_14595at 126.533 kb on + strand, within CSW01_14595at 126.541 kb on - strand, within CSW01_14595at 126.546 kb on - strand, within CSW01_14595at 126.558 kb on - strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.655 kb on + strand, within CSW01_14595at 126.663 kb on - strand, within CSW01_14595at 126.663 kb on - strand, within CSW01_14595at 126.733 kb on + strand, within CSW01_14595at 126.753 kb on - strand, within CSW01_14595at 126.757 kb on + strand, within CSW01_14595at 126.757 kb on + strand, within CSW01_14595at 126.765 kb on - strand, within CSW01_14595at 126.765 kb on - strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.767 kb on + strand, within CSW01_14595at 126.770 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.775 kb on - strand, within CSW01_14595at 126.882 kb on + strand, within CSW01_14595at 126.892 kb on + strand, within CSW01_14595at 127.011 kb on - strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.074 kb on + strand, within CSW01_14595at 127.075 kb on - strand, within CSW01_14595at 127.102 kb on + strand, within CSW01_14595at 127.123 kb on + strand, within CSW01_14595at 127.123 kb on + strand, within CSW01_14595at 127.128 kb on + strand, within CSW01_14595at 127.128 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595at 127.150 kb on + strand, within CSW01_14595

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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124,383 + CSW01_14585 0.26 -2.3
124,391 - CSW01_14585 0.26 +1.1
124,401 - CSW01_14585 0.27 -2.3
124,422 + CSW01_14585 0.29 -2.9
124,422 + CSW01_14585 0.29 +0.9
124,453 + CSW01_14585 0.31 -0.5
124,453 + CSW01_14585 0.31 -2.8
124,461 - CSW01_14585 0.32 -0.6
124,461 - CSW01_14585 0.32 -1.5
124,461 - CSW01_14585 0.32 -0.1
124,461 - CSW01_14585 0.32 -0.1
124,514 - CSW01_14585 0.36 -1.2
124,624 - CSW01_14585 0.44 -0.3
124,626 + CSW01_14585 0.44 -1.3
124,626 + CSW01_14585 0.44 -0.3
124,631 + CSW01_14585 0.44 -0.7
124,634 - CSW01_14585 0.44 -3.9
124,634 - CSW01_14585 0.44 +1.0
124,661 + CSW01_14585 0.47 +0.2
124,661 + CSW01_14585 0.47 +0.1
124,669 - CSW01_14585 0.47 -2.4
124,702 + CSW01_14585 0.50 -0.7
124,707 + CSW01_14585 0.50 -2.0
124,715 - CSW01_14585 0.51 +1.4
124,725 - CSW01_14585 0.51 +0.4
124,733 + CSW01_14585 0.52 +0.1
124,757 + CSW01_14585 0.54 +0.9
124,765 - CSW01_14585 0.54 -1.6
124,786 + CSW01_14585 0.56 -0.9
124,796 + CSW01_14585 0.57 -1.0
124,806 + CSW01_14585 0.57 -1.0
124,833 - CSW01_14585 0.59 -0.5
124,842 - CSW01_14585 0.60 +1.4
124,995 + CSW01_14585 0.72 +1.1
125,005 + CSW01_14585 0.72 -3.0
125,005 - CSW01_14585 0.72 -1.0
125,062 - CSW01_14585 0.77 -1.5
125,064 + CSW01_14585 0.77 +0.3
125,072 - CSW01_14585 0.77 -0.2
125,116 - CSW01_14585 0.81 -0.4
125,243 + +0.0
125,243 + -1.2
125,243 + -2.7
125,251 - +1.2
125,251 - -3.0
125,251 - +0.4
125,264 + -3.4
125,279 + -2.3
125,363 + +1.0
125,371 - -1.9
125,488 - CSW01_14590 0.14 -1.7
125,534 + CSW01_14590 0.20 -3.7
125,542 - CSW01_14590 0.21 -1.3
125,544 + CSW01_14590 0.22 +2.1
125,559 + CSW01_14590 0.24 -2.5
125,566 - CSW01_14590 0.24 +0.6
125,566 - CSW01_14590 0.24 -1.7
125,566 - CSW01_14590 0.24 -1.0
125,568 + CSW01_14590 0.25 +0.6
125,576 - CSW01_14590 0.26 +0.9
125,590 - CSW01_14590 0.28 -0.6
125,600 - CSW01_14590 0.29 +0.2
125,600 - CSW01_14590 0.29 -0.2
125,817 + CSW01_14590 0.57 +0.0
125,830 + CSW01_14590 0.59 +0.1
125,830 + CSW01_14590 0.59 -1.1
125,838 - CSW01_14590 0.60 -4.2
125,857 + CSW01_14590 0.62 -0.0
125,872 + CSW01_14590 0.64 -3.4
125,880 - CSW01_14590 0.65 -1.1
125,938 + CSW01_14590 0.72 +1.0
125,948 + CSW01_14590 0.74 +2.5
125,948 + CSW01_14590 0.74 +1.3
125,956 - CSW01_14590 0.75 -2.0
125,965 + CSW01_14590 0.76 +1.7
125,971 + CSW01_14590 0.77 +1.4
125,973 - CSW01_14590 0.77 +0.4
125,979 - CSW01_14590 0.78 +0.7
125,979 - CSW01_14590 0.78 +0.1
125,990 + CSW01_14590 0.79 -0.2
126,097 + -2.2
126,100 - -0.6
126,100 - +0.5
126,100 - +2.0
126,145 + -2.6
126,181 - +1.9
126,188 + -2.4
126,258 + -2.1
126,274 + +0.9
126,324 + +2.0
126,402 + +1.2
126,403 - +1.7
126,403 - -0.8
126,508 + CSW01_14595 0.13 +0.5
126,533 + CSW01_14595 0.14 +0.7
126,541 - CSW01_14595 0.14 -1.5
126,546 - CSW01_14595 0.14 +0.5
126,558 - CSW01_14595 0.15 +0.8
126,655 + CSW01_14595 0.18 +2.2
126,655 + CSW01_14595 0.18 +0.3
126,655 + CSW01_14595 0.18 +0.8
126,655 + CSW01_14595 0.18 +0.5
126,663 - CSW01_14595 0.19 -1.1
126,663 - CSW01_14595 0.19 -1.3
126,733 + CSW01_14595 0.21 -0.2
126,753 - CSW01_14595 0.22 +0.6
126,757 + CSW01_14595 0.22 +1.6
126,757 + CSW01_14595 0.22 -0.6
126,765 - CSW01_14595 0.23 -1.6
126,765 - CSW01_14595 0.23 +1.0
126,767 + CSW01_14595 0.23 -1.6
126,767 + CSW01_14595 0.23 +0.4
126,767 + CSW01_14595 0.23 -2.5
126,767 + CSW01_14595 0.23 +1.2
126,767 + CSW01_14595 0.23 +0.1
126,767 + CSW01_14595 0.23 -3.8
126,770 - CSW01_14595 0.23 +0.1
126,775 - CSW01_14595 0.23 -1.0
126,775 - CSW01_14595 0.23 +1.3
126,775 - CSW01_14595 0.23 +0.7
126,775 - CSW01_14595 0.23 -2.5
126,775 - CSW01_14595 0.23 -1.9
126,882 + CSW01_14595 0.27 -1.7
126,892 + CSW01_14595 0.27 +1.5
127,011 - CSW01_14595 0.32 +1.0
127,074 + CSW01_14595 0.34 -2.4
127,074 + CSW01_14595 0.34 -1.4
127,074 + CSW01_14595 0.34 +0.4
127,075 - CSW01_14595 0.34 -2.6
127,102 + CSW01_14595 0.35 +2.0
127,123 + CSW01_14595 0.36 -2.0
127,123 + CSW01_14595 0.36 +0.5
127,128 + CSW01_14595 0.36 +0.5
127,128 + CSW01_14595 0.36 -3.0
127,150 + CSW01_14595 0.37 +2.2
127,150 + CSW01_14595 0.37 -3.0
127,150 + CSW01_14595 0.37 +0.0
127,150 + CSW01_14595 0.37 +0.1

Or see this region's nucleotide sequence