Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14305

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14295 and CSW01_14300 are separated by 64 nucleotidesCSW01_14300 and CSW01_14305 are separated by 85 nucleotidesCSW01_14305 and CSW01_14310 are separated by 41 nucleotides CSW01_14295: CSW01_14295 - lactate dehydrogenase, at 59,785 to 61,254 _14295 CSW01_14300: CSW01_14300 - purine-nucleoside phosphorylase, at 61,319 to 62,029 _14300 CSW01_14305: CSW01_14305 - hypothetical protein, at 62,115 to 62,294 _14305 CSW01_14310: CSW01_14310 - DUF1722 domain-containing protein, at 62,336 to 63,304 _14310 CSW01_14315: CSW01_14315 - helix-turn-helix-type transcriptional regulator, at 63,294 to 64,091 _14315 Position (kb) 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 61.159 kb on - strandat 61.207 kb on + strandat 61.268 kb on + strandat 61.270 kb on + strandat 61.270 kb on + strandat 61.280 kb on + strandat 61.401 kb on - strand, within CSW01_14300at 61.464 kb on + strand, within CSW01_14300at 61.493 kb on - strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.684 kb on + strand, within CSW01_14300at 61.712 kb on - strand, within CSW01_14300at 61.717 kb on - strand, within CSW01_14300at 61.775 kb on + strand, within CSW01_14300at 61.810 kb on + strand, within CSW01_14300at 61.835 kb on - strand, within CSW01_14300at 61.914 kb on + strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.924 kb on + strand, within CSW01_14300at 61.942 kb on - strand, within CSW01_14300at 61.981 kb on - strandat 62.015 kb on - strandat 62.088 kb on + strandat 62.103 kb on + strandat 62.106 kb on + strandat 62.336 kb on + strandat 62.346 kb on + strandat 62.382 kb on + strandat 62.446 kb on + strand, within CSW01_14310at 62.531 kb on - strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.605 kb on + strand, within CSW01_14310at 62.605 kb on - strand, within CSW01_14310at 62.615 kb on - strand, within CSW01_14310at 62.625 kb on - strand, within CSW01_14310at 62.648 kb on - strand, within CSW01_14310at 62.675 kb on - strand, within CSW01_14310at 62.925 kb on + strand, within CSW01_14310at 62.933 kb on - strand, within CSW01_14310at 62.951 kb on + strand, within CSW01_14310at 63.032 kb on + strand, within CSW01_14310at 63.040 kb on - strand, within CSW01_14310at 63.040 kb on - strand, within CSW01_14310at 63.078 kb on + strand, within CSW01_14310at 63.153 kb on - strand, within CSW01_14310at 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.267 kb on - strandat 63.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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61,159 - -0.1
61,207 + -2.0
61,268 + +0.1
61,270 + -1.4
61,270 + -1.6
61,280 + -2.1
61,401 - CSW01_14300 0.12 +0.9
61,464 + CSW01_14300 0.20 +1.6
61,493 - CSW01_14300 0.24 -0.0
61,545 + CSW01_14300 0.32 +1.4
61,545 + CSW01_14300 0.32 -0.8
61,545 + CSW01_14300 0.32 +0.8
61,545 + CSW01_14300 0.32 -0.5
61,545 + CSW01_14300 0.32 +0.5
61,545 - CSW01_14300 0.32 +0.2
61,553 - CSW01_14300 0.33 -0.2
61,553 - CSW01_14300 0.33 +0.8
61,553 - CSW01_14300 0.33 +0.3
61,553 - CSW01_14300 0.33 -0.9
61,553 - CSW01_14300 0.33 +0.5
61,684 + CSW01_14300 0.51 -2.0
61,712 - CSW01_14300 0.55 -2.9
61,717 - CSW01_14300 0.56 +0.1
61,775 + CSW01_14300 0.64 -1.1
61,810 + CSW01_14300 0.69 +1.2
61,835 - CSW01_14300 0.73 +0.7
61,914 + CSW01_14300 0.84 +0.9
61,922 - CSW01_14300 0.85 +0.7
61,922 - CSW01_14300 0.85 +2.6
61,924 + CSW01_14300 0.85 +1.3
61,942 - CSW01_14300 0.88 -0.4
61,981 - -1.7
62,015 - +1.2
62,088 + -2.0
62,103 + -0.0
62,106 + +0.7
62,336 + -0.1
62,346 + -0.2
62,382 + +2.1
62,446 + CSW01_14310 0.11 -0.4
62,531 - CSW01_14310 0.20 -1.6
62,597 + CSW01_14310 0.27 +0.2
62,597 + CSW01_14310 0.27 -1.0
62,597 + CSW01_14310 0.27 -1.1
62,597 + CSW01_14310 0.27 -0.9
62,605 + CSW01_14310 0.28 +0.6
62,605 - CSW01_14310 0.28 +0.6
62,615 - CSW01_14310 0.29 +0.3
62,625 - CSW01_14310 0.30 +0.1
62,648 - CSW01_14310 0.32 -0.4
62,675 - CSW01_14310 0.35 -0.5
62,925 + CSW01_14310 0.61 +0.4
62,933 - CSW01_14310 0.62 -0.5
62,951 + CSW01_14310 0.63 -1.9
63,032 + CSW01_14310 0.72 -0.8
63,040 - CSW01_14310 0.73 -0.2
63,040 - CSW01_14310 0.73 -0.4
63,078 + CSW01_14310 0.77 +1.4
63,153 - CSW01_14310 0.84 -1.4
63,258 + -0.9
63,258 + +0.3
63,258 + -0.9
63,258 + -0.4
63,258 + +0.9
63,258 + -2.4
63,258 + +0.8
63,265 + -0.5
63,265 + -0.7
63,265 + -2.9
63,266 - +1.3
63,266 - +0.2
63,266 - -2.5
63,266 - +2.0
63,266 - -3.0
63,267 - -2.4
63,289 + -2.3

Or see this region's nucleotide sequence