Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14295

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14290 and CSW01_14295 are separated by 118 nucleotidesCSW01_14295 and CSW01_14300 are separated by 64 nucleotidesCSW01_14300 and CSW01_14305 are separated by 85 nucleotides CSW01_14290: CSW01_14290 - hypothetical protein, at 58,143 to 59,666 _14290 CSW01_14295: CSW01_14295 - lactate dehydrogenase, at 59,785 to 61,254 _14295 CSW01_14300: CSW01_14300 - purine-nucleoside phosphorylase, at 61,319 to 62,029 _14300 CSW01_14305: CSW01_14305 - hypothetical protein, at 62,115 to 62,294 _14305 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 58.816 kb on + strand, within CSW01_14290at 58.818 kb on + strand, within CSW01_14290at 58.826 kb on + strand, within CSW01_14290at 58.867 kb on - strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 59.056 kb on - strand, within CSW01_14290at 59.102 kb on + strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290at 59.226 kb on - strand, within CSW01_14290at 59.231 kb on - strand, within CSW01_14290at 59.272 kb on - strand, within CSW01_14290at 59.317 kb on + strand, within CSW01_14290at 59.317 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.435 kb on - strand, within CSW01_14290at 59.477 kb on - strand, within CSW01_14290at 59.502 kb on + strand, within CSW01_14290at 59.524 kb on - strandat 59.535 kb on + strandat 59.540 kb on - strandat 59.547 kb on + strandat 59.555 kb on - strandat 59.569 kb on + strandat 59.625 kb on + strandat 59.669 kb on - strandat 59.760 kb on + strandat 59.768 kb on + strandat 59.768 kb on + strandat 59.768 kb on + strandat 60.005 kb on - strand, within CSW01_14295at 60.022 kb on + strand, within CSW01_14295at 60.043 kb on - strand, within CSW01_14295at 60.106 kb on + strand, within CSW01_14295at 60.145 kb on + strand, within CSW01_14295at 60.145 kb on + strand, within CSW01_14295at 60.244 kb on - strand, within CSW01_14295at 60.244 kb on - strand, within CSW01_14295at 60.292 kb on - strand, within CSW01_14295at 60.325 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.333 kb on - strand, within CSW01_14295at 60.372 kb on - strand, within CSW01_14295at 60.454 kb on + strand, within CSW01_14295at 60.462 kb on + strand, within CSW01_14295at 60.462 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.548 kb on + strand, within CSW01_14295at 60.582 kb on - strand, within CSW01_14295at 60.652 kb on + strand, within CSW01_14295at 60.652 kb on - strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.821 kb on + strand, within CSW01_14295at 60.832 kb on - strand, within CSW01_14295at 60.955 kb on + strand, within CSW01_14295at 61.023 kb on + strand, within CSW01_14295at 61.031 kb on - strand, within CSW01_14295at 61.031 kb on - strand, within CSW01_14295at 61.049 kb on - strand, within CSW01_14295at 61.159 kb on - strandat 61.207 kb on + strandat 61.268 kb on + strandat 61.270 kb on + strandat 61.270 kb on + strandat 61.280 kb on + strandat 61.401 kb on - strand, within CSW01_14300at 61.464 kb on + strand, within CSW01_14300at 61.493 kb on - strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.684 kb on + strand, within CSW01_14300at 61.712 kb on - strand, within CSW01_14300at 61.717 kb on - strand, within CSW01_14300at 61.775 kb on + strand, within CSW01_14300at 61.810 kb on + strand, within CSW01_14300at 61.835 kb on - strand, within CSW01_14300at 61.914 kb on + strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.924 kb on + strand, within CSW01_14300at 61.942 kb on - strand, within CSW01_14300at 61.981 kb on - strandat 62.015 kb on - strandat 62.088 kb on + strandat 62.103 kb on + strandat 62.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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58,816 + CSW01_14290 0.44 +0.1
58,818 + CSW01_14290 0.44 -1.0
58,826 + CSW01_14290 0.45 +0.1
58,867 - CSW01_14290 0.48 +0.4
58,967 + CSW01_14290 0.54 -1.7
58,967 + CSW01_14290 0.54 +1.3
58,975 - CSW01_14290 0.55 -1.2
58,975 - CSW01_14290 0.55 -0.9
58,975 - CSW01_14290 0.55 -0.4
58,975 - CSW01_14290 0.55 -1.3
58,975 - CSW01_14290 0.55 -0.6
59,056 - CSW01_14290 0.60 -0.4
59,102 + CSW01_14290 0.63 +0.5
59,105 - CSW01_14290 0.63 -1.4
59,105 - CSW01_14290 0.63 -3.8
59,226 - CSW01_14290 0.71 +1.4
59,231 - CSW01_14290 0.71 -0.1
59,272 - CSW01_14290 0.74 +0.8
59,317 + CSW01_14290 0.77 -1.3
59,317 + CSW01_14290 0.77 -3.0
59,427 + CSW01_14290 0.84 +0.4
59,427 + CSW01_14290 0.84 -2.3
59,427 + CSW01_14290 0.84 +0.8
59,435 - CSW01_14290 0.85 -0.0
59,477 - CSW01_14290 0.88 -0.6
59,502 + CSW01_14290 0.89 +0.8
59,524 - -1.7
59,535 + -1.4
59,540 - -1.6
59,547 + -0.7
59,555 - +1.1
59,569 + -0.1
59,625 + -0.4
59,669 - +0.7
59,760 + +0.2
59,768 + +1.7
59,768 + +0.8
59,768 + +2.0
60,005 - CSW01_14295 0.15 +0.1
60,022 + CSW01_14295 0.16 -0.6
60,043 - CSW01_14295 0.18 +0.3
60,106 + CSW01_14295 0.22 +1.5
60,145 + CSW01_14295 0.24 +0.7
60,145 + CSW01_14295 0.24 -0.4
60,244 - CSW01_14295 0.31 -0.5
60,244 - CSW01_14295 0.31 -2.6
60,292 - CSW01_14295 0.34 +2.0
60,325 + CSW01_14295 0.37 -1.1
60,326 + CSW01_14295 0.37 -2.2
60,326 + CSW01_14295 0.37 +0.2
60,333 - CSW01_14295 0.37 -2.3
60,372 - CSW01_14295 0.40 +0.6
60,454 + CSW01_14295 0.46 -1.4
60,462 + CSW01_14295 0.46 +2.0
60,462 - CSW01_14295 0.46 -1.9
60,478 - CSW01_14295 0.47 -1.0
60,478 - CSW01_14295 0.47 -3.1
60,548 + CSW01_14295 0.52 +1.4
60,582 - CSW01_14295 0.54 +0.9
60,652 + CSW01_14295 0.59 +0.4
60,652 - CSW01_14295 0.59 -2.4
60,696 + CSW01_14295 0.62 +0.5
60,696 + CSW01_14295 0.62 +1.0
60,696 + CSW01_14295 0.62 -1.0
60,704 - CSW01_14295 0.63 -0.9
60,704 - CSW01_14295 0.63 -2.0
60,704 - CSW01_14295 0.63 +0.2
60,704 - CSW01_14295 0.63 +1.1
60,704 - CSW01_14295 0.63 +0.4
60,821 + CSW01_14295 0.70 -0.5
60,832 - CSW01_14295 0.71 -0.4
60,955 + CSW01_14295 0.80 +0.4
61,023 + CSW01_14295 0.84 -2.4
61,031 - CSW01_14295 0.85 +0.6
61,031 - CSW01_14295 0.85 +0.3
61,049 - CSW01_14295 0.86 +1.3
61,159 - -0.1
61,207 + -2.0
61,268 + +0.1
61,270 + -1.4
61,270 + -1.6
61,280 + -2.1
61,401 - CSW01_14300 0.12 +0.9
61,464 + CSW01_14300 0.20 +1.6
61,493 - CSW01_14300 0.24 -0.0
61,545 + CSW01_14300 0.32 +1.4
61,545 + CSW01_14300 0.32 -0.8
61,545 + CSW01_14300 0.32 +0.8
61,545 + CSW01_14300 0.32 -0.5
61,545 + CSW01_14300 0.32 +0.5
61,545 - CSW01_14300 0.32 +0.2
61,553 - CSW01_14300 0.33 -0.2
61,553 - CSW01_14300 0.33 +0.8
61,553 - CSW01_14300 0.33 +0.3
61,553 - CSW01_14300 0.33 -0.9
61,553 - CSW01_14300 0.33 +0.5
61,684 + CSW01_14300 0.51 -2.0
61,712 - CSW01_14300 0.55 -2.9
61,717 - CSW01_14300 0.56 +0.1
61,775 + CSW01_14300 0.64 -1.1
61,810 + CSW01_14300 0.69 +1.2
61,835 - CSW01_14300 0.73 +0.7
61,914 + CSW01_14300 0.84 +0.9
61,922 - CSW01_14300 0.85 +0.7
61,922 - CSW01_14300 0.85 +2.6
61,924 + CSW01_14300 0.85 +1.3
61,942 - CSW01_14300 0.88 -0.4
61,981 - -1.7
62,015 - +1.2
62,088 + -2.0
62,103 + -0.0
62,106 + +0.7

Or see this region's nucleotide sequence