Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14185 and CSW01_14190 are separated by 21 nucleotides CSW01_14190 and CSW01_14195 are separated by 89 nucleotides CSW01_14195 and CSW01_14200 are separated by 0 nucleotides CSW01_14200 and CSW01_14205 are separated by 120 nucleotides
CSW01_14185: CSW01_14185 - chitinase, at 33,034 to 35,583
_14185
CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859
_14190
CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683
_14195
CSW01_14200: CSW01_14200 - arginase, at 36,684 to 37,526
_14200
CSW01_14205: CSW01_14205 - methyl-accepting chemotaxis protein, at 37,647 to 39,212
_14205
Position (kb) 35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 34.954 kb on - strand, within CSW01_14185 at 34.957 kb on + strand, within CSW01_14185 at 34.982 kb on + strand, within CSW01_14185 at 34.990 kb on - strand, within CSW01_14185 at 34.990 kb on - strand, within CSW01_14185 at 35.063 kb on - strand, within CSW01_14185 at 35.078 kb on + strand, within CSW01_14185 at 35.091 kb on - strand, within CSW01_14185 at 35.117 kb on - strand, within CSW01_14185 at 35.124 kb on - strand, within CSW01_14185 at 35.160 kb on + strand, within CSW01_14185 at 35.179 kb on - strand, within CSW01_14185 at 35.189 kb on + strand, within CSW01_14185 at 35.210 kb on - strand, within CSW01_14185 at 35.307 kb on - strand, within CSW01_14185 at 35.316 kb on - strand, within CSW01_14185 at 35.365 kb on + strand at 35.373 kb on - strand at 35.442 kb on + strand at 35.442 kb on + strand at 35.450 kb on - strand at 35.450 kb on - strand at 35.466 kb on + strand at 35.499 kb on - strand at 35.535 kb on + strand at 35.561 kb on - strand at 35.570 kb on + strand at 35.570 kb on + strand at 35.591 kb on + strand at 35.591 kb on + strand at 35.591 kb on + strand at 35.599 kb on - strand at 35.599 kb on - strand at 35.599 kb on - strand at 35.601 kb on + strand at 35.637 kb on + strand, within CSW01_14190 at 35.637 kb on + strand, within CSW01_14190 at 35.645 kb on - strand, within CSW01_14190 at 35.647 kb on + strand, within CSW01_14190 at 35.647 kb on + strand, within CSW01_14190 at 35.657 kb on + strand, within CSW01_14190 at 35.704 kb on - strand, within CSW01_14190 at 35.777 kb on + strand, within CSW01_14190 at 35.785 kb on - strand, within CSW01_14190 at 35.926 kb on + strand at 35.938 kb on + strand at 36.225 kb on + strand, within CSW01_14195 at 36.225 kb on + strand, within CSW01_14195 at 36.225 kb on + strand, within CSW01_14195 at 36.233 kb on - strand, within CSW01_14195 at 36.233 kb on - strand, within CSW01_14195 at 36.233 kb on - strand, within CSW01_14195 at 36.235 kb on - strand, within CSW01_14195 at 36.365 kb on + strand, within CSW01_14195 at 36.365 kb on + strand, within CSW01_14195 at 36.373 kb on - strand, within CSW01_14195 at 36.373 kb on - strand, within CSW01_14195 at 36.406 kb on - strand, within CSW01_14195 at 36.455 kb on - strand, within CSW01_14195 at 36.493 kb on + strand, within CSW01_14195 at 36.542 kb on + strand, within CSW01_14195 at 36.570 kb on + strand, within CSW01_14195 at 36.578 kb on - strand, within CSW01_14195 at 36.620 kb on - strand at 36.670 kb on - strand at 36.679 kb on + strand at 36.679 kb on + strand at 36.701 kb on + strand at 36.714 kb on + strand at 36.800 kb on + strand, within CSW01_14200 at 36.961 kb on - strand, within CSW01_14200 at 37.014 kb on + strand, within CSW01_14200 at 37.057 kb on + strand, within CSW01_14200 at 37.065 kb on - strand, within CSW01_14200 at 37.065 kb on - strand, within CSW01_14200 at 37.065 kb on - strand, within CSW01_14200 at 37.099 kb on + strand, within CSW01_14200 at 37.136 kb on + strand, within CSW01_14200 at 37.159 kb on - strand, within CSW01_14200 at 37.161 kb on + strand, within CSW01_14200 at 37.161 kb on + strand, within CSW01_14200 at 37.161 kb on + strand, within CSW01_14200 at 37.164 kb on - strand, within CSW01_14200 at 37.169 kb on - strand, within CSW01_14200 at 37.172 kb on + strand, within CSW01_14200 at 37.180 kb on + strand, within CSW01_14200 at 37.180 kb on + strand, within CSW01_14200 at 37.180 kb on + strand, within CSW01_14200 at 37.181 kb on - strand, within CSW01_14200 at 37.187 kb on - strand, within CSW01_14200 at 37.188 kb on - strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.219 kb on + strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.227 kb on - strand, within CSW01_14200 at 37.278 kb on + strand, within CSW01_14200 at 37.314 kb on - strand, within CSW01_14200 at 37.314 kb on - strand, within CSW01_14200 at 37.356 kb on + strand, within CSW01_14200 at 37.356 kb on - strand, within CSW01_14200 at 37.364 kb on - strand, within CSW01_14200 at 37.376 kb on + strand, within CSW01_14200 at 37.381 kb on - strand, within CSW01_14200 at 37.421 kb on - strand, within CSW01_14200 at 37.461 kb on + strand at 37.474 kb on - strand at 37.516 kb on + strand at 37.524 kb on - strand at 37.579 kb on - strand at 37.581 kb on - strand at 37.588 kb on + strand at 37.589 kb on - strand at 37.677 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 34,954 - CSW01_14185 0.75 -2.8 34,957 + CSW01_14185 0.75 -3.0 34,982 + CSW01_14185 0.76 -2.6 34,990 - CSW01_14185 0.77 -0.6 34,990 - CSW01_14185 0.77 +1.0 35,063 - CSW01_14185 0.80 -1.0 35,078 + CSW01_14185 0.80 -2.5 35,091 - CSW01_14185 0.81 +0.7 35,117 - CSW01_14185 0.82 -0.4 35,124 - CSW01_14185 0.82 -0.7 35,160 + CSW01_14185 0.83 +0.7 35,179 - CSW01_14185 0.84 +0.0 35,189 + CSW01_14185 0.85 +1.1 35,210 - CSW01_14185 0.85 -1.6 35,307 - CSW01_14185 0.89 -0.2 35,316 - CSW01_14185 0.89 +0.3 35,365 + -0.9 35,373 - -2.4 35,442 + +0.0 35,442 + -3.0 35,450 - +0.7 35,450 - -0.3 35,466 + +1.8 35,499 - -0.4 35,535 + +0.9 35,561 - +0.1 35,570 + +0.8 35,570 + -1.9 35,591 + +0.1 35,591 + -1.0 35,591 + -2.0 35,599 - +0.0 35,599 - -1.0 35,599 - +1.2 35,601 + -0.7 35,637 + CSW01_14190 0.13 +0.3 35,637 + CSW01_14190 0.13 +0.8 35,645 - CSW01_14190 0.16 +0.0 35,647 + CSW01_14190 0.16 -2.2 35,647 + CSW01_14190 0.16 +0.5 35,657 + CSW01_14190 0.20 -2.9 35,704 - CSW01_14190 0.39 +0.5 35,777 + CSW01_14190 0.67 +0.1 35,785 - CSW01_14190 0.71 -1.6 35,926 + -2.0 35,938 + +0.2 36,225 + CSW01_14195 0.38 -0.0 36,225 + CSW01_14195 0.38 -1.9 36,225 + CSW01_14195 0.38 +0.2 36,233 - CSW01_14195 0.39 -0.8 36,233 - CSW01_14195 0.39 -3.9 36,233 - CSW01_14195 0.39 +1.2 36,235 - CSW01_14195 0.39 +2.1 36,365 + CSW01_14195 0.57 +1.8 36,365 + CSW01_14195 0.57 +0.4 36,373 - CSW01_14195 0.58 -1.2 36,373 - CSW01_14195 0.58 -0.4 36,406 - CSW01_14195 0.62 +0.7 36,455 - CSW01_14195 0.69 +0.3 36,493 + CSW01_14195 0.74 -3.0 36,542 + CSW01_14195 0.81 +1.5 36,570 + CSW01_14195 0.84 -0.9 36,578 - CSW01_14195 0.86 +1.2 36,620 - -0.1 36,670 - +0.6 36,679 + +0.2 36,679 + -1.6 36,701 + -0.9 36,714 + -2.1 36,800 + CSW01_14200 0.14 -2.8 36,961 - CSW01_14200 0.33 +1.4 37,014 + CSW01_14200 0.39 +1.1 37,057 + CSW01_14200 0.44 -2.6 37,065 - CSW01_14200 0.45 +0.8 37,065 - CSW01_14200 0.45 +0.2 37,065 - CSW01_14200 0.45 +0.0 37,099 + CSW01_14200 0.49 +1.0 37,136 + CSW01_14200 0.54 +0.2 37,159 - CSW01_14200 0.56 -0.7 37,161 + CSW01_14200 0.57 +0.6 37,161 + CSW01_14200 0.57 +1.1 37,161 + CSW01_14200 0.57 +0.2 37,164 - CSW01_14200 0.57 -0.3 37,169 - CSW01_14200 0.58 +0.3 37,172 + CSW01_14200 0.58 +0.7 37,180 + CSW01_14200 0.59 -2.2 37,180 + CSW01_14200 0.59 -1.3 37,180 + CSW01_14200 0.59 +1.4 37,181 - CSW01_14200 0.59 -0.2 37,187 - CSW01_14200 0.60 +0.7 37,188 - CSW01_14200 0.60 -1.4 37,219 + CSW01_14200 0.63 -0.2 37,219 + CSW01_14200 0.63 +2.0 37,219 + CSW01_14200 0.63 +0.1 37,219 + CSW01_14200 0.63 -2.8 37,219 + CSW01_14200 0.63 -0.0 37,219 + CSW01_14200 0.63 +0.4 37,219 + CSW01_14200 0.63 +0.1 37,219 + CSW01_14200 0.63 +1.3 37,219 + CSW01_14200 0.63 +0.0 37,227 - CSW01_14200 0.64 -1.0 37,227 - CSW01_14200 0.64 +0.4 37,227 - CSW01_14200 0.64 -2.9 37,227 - CSW01_14200 0.64 +1.5 37,227 - CSW01_14200 0.64 -0.2 37,227 - CSW01_14200 0.64 +0.6 37,227 - CSW01_14200 0.64 +0.7 37,227 - CSW01_14200 0.64 -0.1 37,227 - CSW01_14200 0.64 +0.7 37,227 - CSW01_14200 0.64 -2.6 37,227 - CSW01_14200 0.64 +0.2 37,227 - CSW01_14200 0.64 +0.9 37,227 - CSW01_14200 0.64 -0.5 37,278 + CSW01_14200 0.70 +1.2 37,314 - CSW01_14200 0.75 -0.2 37,314 - CSW01_14200 0.75 +0.7 37,356 + CSW01_14200 0.80 -0.0 37,356 - CSW01_14200 0.80 -0.3 37,364 - CSW01_14200 0.81 -0.7 37,376 + CSW01_14200 0.82 +0.8 37,381 - CSW01_14200 0.83 -0.6 37,421 - CSW01_14200 0.87 +0.3 37,461 + -1.7 37,474 - -1.9 37,516 + -3.2 37,524 - +0.5 37,579 - -0.2 37,581 - +1.5 37,588 + +0.6 37,589 - -2.0 37,677 + -2.5
Or see this region's nucleotide sequence