Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14190

Experiment: ICP1_phage_2.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14185 and CSW01_14190 are separated by 21 nucleotidesCSW01_14190 and CSW01_14195 are separated by 89 nucleotidesCSW01_14195 and CSW01_14200 are separated by 0 nucleotides CSW01_14185: CSW01_14185 - chitinase, at 33,034 to 35,583 _14185 CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859 _14190 CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 CSW01_14200: CSW01_14200 - arginase, at 36,684 to 37,526 _14200 Position (kb) 35 36Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 34.636 kb on + strand, within CSW01_14185at 34.644 kb on + strand, within CSW01_14185at 34.729 kb on + strand, within CSW01_14185at 34.778 kb on - strand, within CSW01_14185at 34.859 kb on + strand, within CSW01_14185at 34.862 kb on - strand, within CSW01_14185at 34.908 kb on + strand, within CSW01_14185at 34.920 kb on - strand, within CSW01_14185at 34.954 kb on - strand, within CSW01_14185at 34.957 kb on + strand, within CSW01_14185at 34.982 kb on + strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 35.063 kb on - strand, within CSW01_14185at 35.078 kb on + strand, within CSW01_14185at 35.091 kb on - strand, within CSW01_14185at 35.117 kb on - strand, within CSW01_14185at 35.124 kb on - strand, within CSW01_14185at 35.160 kb on + strand, within CSW01_14185at 35.179 kb on - strand, within CSW01_14185at 35.189 kb on + strand, within CSW01_14185at 35.210 kb on - strand, within CSW01_14185at 35.307 kb on - strand, within CSW01_14185at 35.316 kb on - strand, within CSW01_14185at 35.365 kb on + strandat 35.373 kb on - strandat 35.442 kb on + strandat 35.442 kb on + strandat 35.450 kb on - strandat 35.450 kb on - strandat 35.466 kb on + strandat 35.499 kb on - strandat 35.535 kb on + strandat 35.561 kb on - strandat 35.570 kb on + strandat 35.570 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.601 kb on + strandat 35.637 kb on + strand, within CSW01_14190at 35.637 kb on + strand, within CSW01_14190at 35.645 kb on - strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.657 kb on + strand, within CSW01_14190at 35.704 kb on - strand, within CSW01_14190at 35.777 kb on + strand, within CSW01_14190at 35.785 kb on - strand, within CSW01_14190at 35.926 kb on + strandat 35.938 kb on + strandat 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.235 kb on - strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.406 kb on - strand, within CSW01_14195at 36.455 kb on - strand, within CSW01_14195at 36.493 kb on + strand, within CSW01_14195at 36.542 kb on + strand, within CSW01_14195at 36.570 kb on + strand, within CSW01_14195at 36.578 kb on - strand, within CSW01_14195at 36.620 kb on - strandat 36.670 kb on - strandat 36.679 kb on + strandat 36.679 kb on + strandat 36.701 kb on + strandat 36.714 kb on + strandat 36.800 kb on + strand, within CSW01_14200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
remove
34,636 + CSW01_14185 0.63 +0.3
34,644 + CSW01_14185 0.63 -1.7
34,729 + CSW01_14185 0.66 -0.6
34,778 - CSW01_14185 0.68 +1.2
34,859 + CSW01_14185 0.72 -0.8
34,862 - CSW01_14185 0.72 +0.1
34,908 + CSW01_14185 0.73 +1.5
34,920 - CSW01_14185 0.74 +1.0
34,954 - CSW01_14185 0.75 -2.8
34,957 + CSW01_14185 0.75 -3.0
34,982 + CSW01_14185 0.76 -2.6
34,990 - CSW01_14185 0.77 -0.6
34,990 - CSW01_14185 0.77 +1.0
35,063 - CSW01_14185 0.80 -1.0
35,078 + CSW01_14185 0.80 -2.5
35,091 - CSW01_14185 0.81 +0.7
35,117 - CSW01_14185 0.82 -0.4
35,124 - CSW01_14185 0.82 -0.7
35,160 + CSW01_14185 0.83 +0.7
35,179 - CSW01_14185 0.84 +0.0
35,189 + CSW01_14185 0.85 +1.1
35,210 - CSW01_14185 0.85 -1.6
35,307 - CSW01_14185 0.89 -0.2
35,316 - CSW01_14185 0.89 +0.3
35,365 + -0.9
35,373 - -2.4
35,442 + +0.0
35,442 + -3.0
35,450 - +0.7
35,450 - -0.3
35,466 + +1.8
35,499 - -0.4
35,535 + +0.9
35,561 - +0.1
35,570 + +0.8
35,570 + -1.9
35,591 + +0.1
35,591 + -1.0
35,591 + -2.0
35,599 - +0.0
35,599 - -1.0
35,599 - +1.2
35,601 + -0.7
35,637 + CSW01_14190 0.13 +0.3
35,637 + CSW01_14190 0.13 +0.8
35,645 - CSW01_14190 0.16 +0.0
35,647 + CSW01_14190 0.16 -2.2
35,647 + CSW01_14190 0.16 +0.5
35,657 + CSW01_14190 0.20 -2.9
35,704 - CSW01_14190 0.39 +0.5
35,777 + CSW01_14190 0.67 +0.1
35,785 - CSW01_14190 0.71 -1.6
35,926 + -2.0
35,938 + +0.2
36,225 + CSW01_14195 0.38 -0.0
36,225 + CSW01_14195 0.38 -1.9
36,225 + CSW01_14195 0.38 +0.2
36,233 - CSW01_14195 0.39 -0.8
36,233 - CSW01_14195 0.39 -3.9
36,233 - CSW01_14195 0.39 +1.2
36,235 - CSW01_14195 0.39 +2.1
36,365 + CSW01_14195 0.57 +1.8
36,365 + CSW01_14195 0.57 +0.4
36,373 - CSW01_14195 0.58 -1.2
36,373 - CSW01_14195 0.58 -0.4
36,406 - CSW01_14195 0.62 +0.7
36,455 - CSW01_14195 0.69 +0.3
36,493 + CSW01_14195 0.74 -3.0
36,542 + CSW01_14195 0.81 +1.5
36,570 + CSW01_14195 0.84 -0.9
36,578 - CSW01_14195 0.86 +1.2
36,620 - -0.1
36,670 - +0.6
36,679 + +0.2
36,679 + -1.6
36,701 + -0.9
36,714 + -2.1
36,800 + CSW01_14200 0.14 -2.8

Or see this region's nucleotide sequence