Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14110 and CSW01_14115 are separated by 519 nucleotides CSW01_14115 and CSW01_14120 are separated by 85 nucleotides
CSW01_14110: CSW01_14110 - HTH-type transcriptional regulator MalT, at 8,986 to 11,751
_14110
CSW01_14115: CSW01_14115 - glycogen/starch/alpha-glucan phosphorylase, at 12,271 to 14,724
_14115
CSW01_14120: CSW01_14120 - 4-alpha-glucanotransferase, at 14,810 to 16,990
_14120
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 11.319 kb on + strand, within CSW01_14110 at 11.327 kb on - strand, within CSW01_14110 at 11.363 kb on + strand, within CSW01_14110 at 11.363 kb on + strand, within CSW01_14110 at 11.371 kb on - strand, within CSW01_14110 at 11.499 kb on + strand at 11.504 kb on + strand at 11.507 kb on - strand at 11.507 kb on - strand at 11.507 kb on - strand at 11.507 kb on - strand at 11.523 kb on - strand at 11.660 kb on + strand at 11.684 kb on - strand at 11.752 kb on + strand at 11.759 kb on + strand at 11.928 kb on - strand at 11.939 kb on + strand at 11.939 kb on + strand at 11.939 kb on + strand at 11.997 kb on + strand at 11.999 kb on + strand at 12.105 kb on - strand at 12.149 kb on + strand at 12.171 kb on - strand at 12.227 kb on + strand at 12.235 kb on - strand at 12.248 kb on + strand at 12.358 kb on + strand at 12.387 kb on - strand at 12.406 kb on - strand at 12.455 kb on - strand at 12.517 kb on + strand, within CSW01_14115 at 12.523 kb on + strand, within CSW01_14115 at 12.541 kb on - strand, within CSW01_14115 at 12.546 kb on - strand, within CSW01_14115 at 12.558 kb on - strand, within CSW01_14115 at 12.578 kb on + strand, within CSW01_14115 at 12.602 kb on + strand, within CSW01_14115 at 12.642 kb on - strand, within CSW01_14115 at 12.642 kb on - strand, within CSW01_14115 at 12.642 kb on - strand, within CSW01_14115 at 12.642 kb on - strand, within CSW01_14115 at 12.750 kb on - strand, within CSW01_14115 at 12.792 kb on - strand, within CSW01_14115 at 12.820 kb on - strand, within CSW01_14115 at 12.820 kb on - strand, within CSW01_14115 at 12.857 kb on - strand, within CSW01_14115 at 12.877 kb on + strand, within CSW01_14115 at 12.895 kb on - strand, within CSW01_14115 at 12.958 kb on - strand, within CSW01_14115 at 13.005 kb on - strand, within CSW01_14115 at 13.031 kb on + strand, within CSW01_14115 at 13.031 kb on + strand, within CSW01_14115 at 13.134 kb on + strand, within CSW01_14115 at 13.189 kb on + strand, within CSW01_14115 at 13.189 kb on + strand, within CSW01_14115 at 13.230 kb on + strand, within CSW01_14115 at 13.230 kb on + strand, within CSW01_14115 at 13.230 kb on + strand, within CSW01_14115 at 13.238 kb on - strand, within CSW01_14115 at 13.243 kb on + strand, within CSW01_14115 at 13.243 kb on + strand, within CSW01_14115 at 13.243 kb on + strand, within CSW01_14115 at 13.342 kb on - strand, within CSW01_14115 at 13.362 kb on + strand, within CSW01_14115 at 13.370 kb on - strand, within CSW01_14115 at 13.503 kb on + strand, within CSW01_14115 at 13.550 kb on + strand, within CSW01_14115 at 13.568 kb on + strand, within CSW01_14115 at 13.583 kb on + strand, within CSW01_14115 at 13.591 kb on - strand, within CSW01_14115 at 13.616 kb on - strand, within CSW01_14115 at 13.690 kb on - strand, within CSW01_14115 at 13.781 kb on + strand, within CSW01_14115 at 13.938 kb on + strand, within CSW01_14115 at 14.021 kb on + strand, within CSW01_14115 at 14.087 kb on - strand, within CSW01_14115 at 14.110 kb on + strand, within CSW01_14115 at 14.156 kb on + strand, within CSW01_14115 at 14.220 kb on - strand, within CSW01_14115 at 14.230 kb on + strand, within CSW01_14115 at 14.256 kb on + strand, within CSW01_14115 at 14.276 kb on - strand, within CSW01_14115 at 14.276 kb on - strand, within CSW01_14115 at 14.283 kb on + strand, within CSW01_14115 at 14.290 kb on + strand, within CSW01_14115 at 14.372 kb on + strand, within CSW01_14115 at 14.389 kb on + strand, within CSW01_14115 at 14.404 kb on - strand, within CSW01_14115 at 14.404 kb on - strand, within CSW01_14115 at 14.423 kb on + strand, within CSW01_14115 at 14.433 kb on + strand, within CSW01_14115 at 14.441 kb on - strand, within CSW01_14115 at 14.462 kb on - strand, within CSW01_14115 at 14.469 kb on - strand, within CSW01_14115 at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.639 kb on - strand at 14.674 kb on + strand at 14.682 kb on - strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.711 kb on + strand at 14.713 kb on + strand at 14.713 kb on + strand at 14.713 kb on + strand at 14.716 kb on - strand at 14.718 kb on + strand at 14.726 kb on - strand at 14.737 kb on + strand at 14.778 kb on - strand at 14.813 kb on + strand at 14.884 kb on - strand at 15.022 kb on + strand at 15.030 kb on - strand, within CSW01_14120 at 15.054 kb on + strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.118 kb on + strand, within CSW01_14120 at 15.190 kb on + strand, within CSW01_14120 at 15.198 kb on - strand, within CSW01_14120 at 15.239 kb on - strand, within CSW01_14120 at 15.286 kb on - strand, within CSW01_14120 at 15.302 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.351 kb on - strand, within CSW01_14120 at 15.351 kb on - strand, within CSW01_14120 at 15.375 kb on - strand, within CSW01_14120 at 15.444 kb on + strand, within CSW01_14120 at 15.466 kb on + strand, within CSW01_14120 at 15.491 kb on + strand, within CSW01_14120 at 15.527 kb on + strand, within CSW01_14120 at 15.570 kb on + strand, within CSW01_14120 at 15.642 kb on + strand, within CSW01_14120 at 15.687 kb on - strand, within CSW01_14120
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 11,319 + CSW01_14110 0.84 -0.6 11,327 - CSW01_14110 0.85 -1.9 11,363 + CSW01_14110 0.86 +0.4 11,363 + CSW01_14110 0.86 +0.2 11,371 - CSW01_14110 0.86 -3.6 11,499 + -1.2 11,504 + -1.5 11,507 - +1.4 11,507 - -0.5 11,507 - -0.5 11,507 - -1.0 11,523 - -3.8 11,660 + +0.7 11,684 - +1.5 11,752 + -0.3 11,759 + +0.2 11,928 - -1.0 11,939 + -0.9 11,939 + -0.0 11,939 + +1.0 11,997 + +1.3 11,999 + -1.2 12,105 - +1.5 12,149 + +0.4 12,171 - -1.5 12,227 + -4.2 12,235 - -0.3 12,248 + +0.1 12,358 + +0.7 12,387 - -0.1 12,406 - -2.1 12,455 - -0.9 12,517 + CSW01_14115 0.10 -2.0 12,523 + CSW01_14115 0.10 -1.5 12,541 - CSW01_14115 0.11 +1.1 12,546 - CSW01_14115 0.11 -0.9 12,558 - CSW01_14115 0.12 +1.1 12,578 + CSW01_14115 0.13 +0.8 12,602 + CSW01_14115 0.13 +1.7 12,642 - CSW01_14115 0.15 -1.6 12,642 - CSW01_14115 0.15 +1.8 12,642 - CSW01_14115 0.15 -1.8 12,642 - CSW01_14115 0.15 -0.6 12,750 - CSW01_14115 0.20 -1.6 12,792 - CSW01_14115 0.21 +0.5 12,820 - CSW01_14115 0.22 -2.7 12,820 - CSW01_14115 0.22 +0.4 12,857 - CSW01_14115 0.24 +0.6 12,877 + CSW01_14115 0.25 -2.4 12,895 - CSW01_14115 0.25 -2.6 12,958 - CSW01_14115 0.28 -1.5 13,005 - CSW01_14115 0.30 +0.7 13,031 + CSW01_14115 0.31 +2.3 13,031 + CSW01_14115 0.31 -0.5 13,134 + CSW01_14115 0.35 -1.0 13,189 + CSW01_14115 0.37 -1.6 13,189 + CSW01_14115 0.37 +0.8 13,230 + CSW01_14115 0.39 +0.3 13,230 + CSW01_14115 0.39 +1.3 13,230 + CSW01_14115 0.39 -1.2 13,238 - CSW01_14115 0.39 +0.5 13,243 + CSW01_14115 0.40 +0.2 13,243 + CSW01_14115 0.40 +0.6 13,243 + CSW01_14115 0.40 +1.7 13,342 - CSW01_14115 0.44 -0.7 13,362 + CSW01_14115 0.44 +0.4 13,370 - CSW01_14115 0.45 -1.5 13,503 + CSW01_14115 0.50 +2.7 13,550 + CSW01_14115 0.52 +1.3 13,568 + CSW01_14115 0.53 +2.4 13,583 + CSW01_14115 0.53 +0.1 13,591 - CSW01_14115 0.54 +0.7 13,616 - CSW01_14115 0.55 -0.3 13,690 - CSW01_14115 0.58 +1.7 13,781 + CSW01_14115 0.62 -1.5 13,938 + CSW01_14115 0.68 +1.1 14,021 + CSW01_14115 0.71 +1.8 14,087 - CSW01_14115 0.74 -0.1 14,110 + CSW01_14115 0.75 -2.1 14,156 + CSW01_14115 0.77 +0.1 14,220 - CSW01_14115 0.79 -1.6 14,230 + CSW01_14115 0.80 +0.6 14,256 + CSW01_14115 0.81 -2.4 14,276 - CSW01_14115 0.82 -0.9 14,276 - CSW01_14115 0.82 +0.2 14,283 + CSW01_14115 0.82 +0.3 14,290 + CSW01_14115 0.82 -0.6 14,372 + CSW01_14115 0.86 +0.2 14,389 + CSW01_14115 0.86 +0.5 14,404 - CSW01_14115 0.87 +0.8 14,404 - CSW01_14115 0.87 -3.5 14,423 + CSW01_14115 0.88 +0.6 14,433 + CSW01_14115 0.88 -1.2 14,441 - CSW01_14115 0.88 +0.4 14,462 - CSW01_14115 0.89 +1.2 14,469 - CSW01_14115 0.90 -2.0 14,503 + +1.1 14,503 + +1.6 14,503 + +0.1 14,503 + +0.4 14,503 + -0.2 14,503 + -1.2 14,503 + -1.6 14,503 + -2.8 14,503 + +0.3 14,503 + +1.0 14,503 + +1.7 14,503 + -1.0 14,511 - +1.1 14,511 - -2.0 14,511 - +2.0 14,511 - -1.4 14,511 - -1.6 14,511 - +0.8 14,639 - -1.5 14,674 + +1.8 14,682 - -1.4 14,708 + +0.4 14,708 + -0.2 14,708 + +1.2 14,708 + -2.4 14,711 + -1.4 14,713 + +1.8 14,713 + -1.9 14,713 + +2.4 14,716 - -0.9 14,718 + -2.8 14,726 - -1.8 14,737 + -3.1 14,778 - +0.4 14,813 + -2.6 14,884 - -1.0 15,022 + -0.3 15,030 - CSW01_14120 0.10 -0.4 15,054 + CSW01_14120 0.11 -2.6 15,062 - CSW01_14120 0.12 -2.9 15,062 - CSW01_14120 0.12 -1.9 15,062 - CSW01_14120 0.12 -1.6 15,118 + CSW01_14120 0.14 +0.3 15,190 + CSW01_14120 0.17 -1.6 15,198 - CSW01_14120 0.18 -1.8 15,239 - CSW01_14120 0.20 +0.2 15,286 - CSW01_14120 0.22 -1.6 15,302 + CSW01_14120 0.23 +0.6 15,343 + CSW01_14120 0.24 -2.7 15,343 + CSW01_14120 0.24 -0.5 15,343 + CSW01_14120 0.24 -2.4 15,351 - CSW01_14120 0.25 -1.0 15,351 - CSW01_14120 0.25 +1.2 15,375 - CSW01_14120 0.26 -1.5 15,444 + CSW01_14120 0.29 -1.0 15,466 + CSW01_14120 0.30 +1.6 15,491 + CSW01_14120 0.31 +0.1 15,527 + CSW01_14120 0.33 +0.7 15,570 + CSW01_14120 0.35 -0.9 15,642 + CSW01_14120 0.38 +0.1 15,687 - CSW01_14120 0.40 -0.4
Or see this region's nucleotide sequence