Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12830 and CSW01_12835 are separated by 8 nucleotides CSW01_12835 and CSW01_12840 are separated by 160 nucleotides CSW01_12840 and CSW01_12845 are separated by 71 nucleotides
CSW01_12830: CSW01_12830 - RNase adaptor protein RapZ, at 2,745,567 to 2,746,427
_12830
CSW01_12835: CSW01_12835 - phosphocarrier protein NPr, at 2,746,436 to 2,746,714
_12835
CSW01_12840: CSW01_12840 - magnesium transporter, at 2,746,875 to 2,748,236
_12840
CSW01_12845: CSW01_12845 - metalloprotease PmbA, at 2,748,308 to 2,749,651
_12845
Position (kb)
2746
2747
2748
2749 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2745.893 kb on + strand, within CSW01_12830 at 2745.938 kb on + strand, within CSW01_12830 at 2745.979 kb on + strand, within CSW01_12830 at 2746.049 kb on + strand, within CSW01_12830 at 2746.088 kb on - strand, within CSW01_12830 at 2746.152 kb on + strand, within CSW01_12830 at 2746.170 kb on + strand, within CSW01_12830 at 2746.170 kb on + strand, within CSW01_12830 at 2746.178 kb on - strand, within CSW01_12830 at 2746.211 kb on - strand, within CSW01_12830 at 2746.328 kb on + strand, within CSW01_12830 at 2746.328 kb on - strand, within CSW01_12830 at 2746.389 kb on - strand at 2746.392 kb on - strand at 2746.396 kb on + strand at 2746.423 kb on + strand at 2746.473 kb on + strand, within CSW01_12835 at 2746.473 kb on + strand, within CSW01_12835 at 2746.473 kb on + strand, within CSW01_12835 at 2746.481 kb on - strand, within CSW01_12835 at 2746.517 kb on + strand, within CSW01_12835 at 2746.535 kb on + strand, within CSW01_12835 at 2746.544 kb on + strand, within CSW01_12835 at 2746.547 kb on - strand, within CSW01_12835 at 2746.549 kb on + strand, within CSW01_12835 at 2746.557 kb on - strand, within CSW01_12835 at 2746.559 kb on - strand, within CSW01_12835 at 2746.583 kb on + strand, within CSW01_12835 at 2746.583 kb on + strand, within CSW01_12835 at 2746.591 kb on - strand, within CSW01_12835 at 2746.625 kb on - strand, within CSW01_12835 at 2746.706 kb on + strand at 2746.709 kb on + strand at 2746.717 kb on + strand at 2746.724 kb on - strand at 2746.839 kb on - strand at 2746.894 kb on - strand at 2746.908 kb on - strand at 2747.037 kb on + strand, within CSW01_12840 at 2747.071 kb on + strand, within CSW01_12840 at 2747.099 kb on + strand, within CSW01_12840 at 2747.099 kb on + strand, within CSW01_12840 at 2747.107 kb on - strand, within CSW01_12840 at 2747.107 kb on - strand, within CSW01_12840 at 2747.220 kb on + strand, within CSW01_12840 at 2747.228 kb on - strand, within CSW01_12840 at 2747.228 kb on - strand, within CSW01_12840 at 2747.255 kb on + strand, within CSW01_12840 at 2747.263 kb on - strand, within CSW01_12840 at 2747.263 kb on - strand, within CSW01_12840 at 2747.265 kb on + strand, within CSW01_12840 at 2747.273 kb on - strand, within CSW01_12840 at 2747.273 kb on - strand, within CSW01_12840 at 2747.278 kb on - strand, within CSW01_12840 at 2747.278 kb on - strand, within CSW01_12840 at 2747.344 kb on + strand, within CSW01_12840 at 2747.344 kb on + strand, within CSW01_12840 at 2747.344 kb on + strand, within CSW01_12840 at 2747.352 kb on - strand, within CSW01_12840 at 2747.400 kb on + strand, within CSW01_12840 at 2747.456 kb on + strand, within CSW01_12840 at 2747.464 kb on - strand, within CSW01_12840 at 2747.488 kb on - strand, within CSW01_12840 at 2747.490 kb on + strand, within CSW01_12840 at 2747.498 kb on - strand, within CSW01_12840 at 2747.498 kb on - strand, within CSW01_12840 at 2747.513 kb on + strand, within CSW01_12840 at 2747.524 kb on + strand, within CSW01_12840 at 2747.715 kb on + strand, within CSW01_12840 at 2747.787 kb on + strand, within CSW01_12840 at 2747.850 kb on + strand, within CSW01_12840 at 2747.874 kb on - strand, within CSW01_12840 at 2747.923 kb on - strand, within CSW01_12840 at 2748.023 kb on + strand, within CSW01_12840 at 2748.031 kb on - strand, within CSW01_12840 at 2748.136 kb on - strand at 2748.160 kb on - strand at 2748.162 kb on + strand at 2748.162 kb on + strand at 2748.162 kb on + strand at 2748.162 kb on + strand at 2748.170 kb on - strand at 2748.170 kb on - strand at 2748.170 kb on - strand at 2748.359 kb on - strand at 2748.373 kb on + strand at 2748.417 kb on + strand at 2748.514 kb on + strand, within CSW01_12845 at 2748.522 kb on - strand, within CSW01_12845 at 2748.544 kb on + strand, within CSW01_12845 at 2748.544 kb on + strand, within CSW01_12845 at 2748.557 kb on + strand, within CSW01_12845 at 2748.650 kb on - strand, within CSW01_12845 at 2748.666 kb on + strand, within CSW01_12845 at 2748.730 kb on + strand, within CSW01_12845 at 2748.792 kb on - strand, within CSW01_12845 at 2748.890 kb on + strand, within CSW01_12845 at 2748.890 kb on + strand, within CSW01_12845 at 2748.898 kb on - strand, within CSW01_12845 at 2748.929 kb on + strand, within CSW01_12845 at 2749.000 kb on + strand, within CSW01_12845 at 2749.046 kb on - strand, within CSW01_12845 at 2749.081 kb on - strand, within CSW01_12845 at 2749.087 kb on + strand, within CSW01_12845 at 2749.101 kb on - strand, within CSW01_12845 at 2749.101 kb on - strand, within CSW01_12845 at 2749.153 kb on + strand, within CSW01_12845
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 2,745,893 + CSW01_12830 0.38 -0.0 2,745,938 + CSW01_12830 0.43 +1.0 2,745,979 + CSW01_12830 0.48 -2.0 2,746,049 + CSW01_12830 0.56 +0.8 2,746,088 - CSW01_12830 0.61 -0.3 2,746,152 + CSW01_12830 0.68 +2.6 2,746,170 + CSW01_12830 0.70 -0.4 2,746,170 + CSW01_12830 0.70 -3.8 2,746,178 - CSW01_12830 0.71 +1.2 2,746,211 - CSW01_12830 0.75 -1.7 2,746,328 + CSW01_12830 0.88 +0.5 2,746,328 - CSW01_12830 0.88 -0.7 2,746,389 - -1.2 2,746,392 - -0.9 2,746,396 + -0.1 2,746,423 + +0.5 2,746,473 + CSW01_12835 0.13 +0.7 2,746,473 + CSW01_12835 0.13 -0.1 2,746,473 + CSW01_12835 0.13 +0.5 2,746,481 - CSW01_12835 0.16 -0.2 2,746,517 + CSW01_12835 0.29 +0.2 2,746,535 + CSW01_12835 0.35 +0.1 2,746,544 + CSW01_12835 0.39 -2.7 2,746,547 - CSW01_12835 0.40 +0.7 2,746,549 + CSW01_12835 0.41 +0.1 2,746,557 - CSW01_12835 0.43 -2.2 2,746,559 - CSW01_12835 0.44 +2.0 2,746,583 + CSW01_12835 0.53 -0.0 2,746,583 + CSW01_12835 0.53 -0.8 2,746,591 - CSW01_12835 0.56 -3.7 2,746,625 - CSW01_12835 0.68 -2.7 2,746,706 + +0.9 2,746,709 + -1.1 2,746,717 + -1.1 2,746,724 - +0.9 2,746,839 - -0.3 2,746,894 - +1.3 2,746,908 - +0.7 2,747,037 + CSW01_12840 0.12 -0.4 2,747,071 + CSW01_12840 0.14 -0.0 2,747,099 + CSW01_12840 0.16 +1.0 2,747,099 + CSW01_12840 0.16 +1.3 2,747,107 - CSW01_12840 0.17 +0.9 2,747,107 - CSW01_12840 0.17 +1.4 2,747,220 + CSW01_12840 0.25 +0.8 2,747,228 - CSW01_12840 0.26 +0.0 2,747,228 - CSW01_12840 0.26 -1.3 2,747,255 + CSW01_12840 0.28 +1.1 2,747,263 - CSW01_12840 0.28 -0.5 2,747,263 - CSW01_12840 0.28 -1.7 2,747,265 + CSW01_12840 0.29 +0.6 2,747,273 - CSW01_12840 0.29 +3.1 2,747,273 - CSW01_12840 0.29 -0.4 2,747,278 - CSW01_12840 0.30 -0.5 2,747,278 - CSW01_12840 0.30 +1.6 2,747,344 + CSW01_12840 0.34 +0.5 2,747,344 + CSW01_12840 0.34 +1.5 2,747,344 + CSW01_12840 0.34 -2.7 2,747,352 - CSW01_12840 0.35 +0.1 2,747,400 + CSW01_12840 0.39 +3.0 2,747,456 + CSW01_12840 0.43 -0.6 2,747,464 - CSW01_12840 0.43 +0.2 2,747,488 - CSW01_12840 0.45 -2.4 2,747,490 + CSW01_12840 0.45 +0.1 2,747,498 - CSW01_12840 0.46 -0.7 2,747,498 - CSW01_12840 0.46 +1.1 2,747,513 + CSW01_12840 0.47 -0.1 2,747,524 + CSW01_12840 0.48 -3.2 2,747,715 + CSW01_12840 0.62 +0.7 2,747,787 + CSW01_12840 0.67 +0.8 2,747,850 + CSW01_12840 0.72 -0.4 2,747,874 - CSW01_12840 0.73 -2.2 2,747,923 - CSW01_12840 0.77 -2.9 2,748,023 + CSW01_12840 0.84 -2.2 2,748,031 - CSW01_12840 0.85 +0.4 2,748,136 - +1.3 2,748,160 - -1.2 2,748,162 + +0.8 2,748,162 + +1.2 2,748,162 + -0.3 2,748,162 + +2.2 2,748,170 - +0.6 2,748,170 - -1.3 2,748,170 - +1.0 2,748,359 - +0.5 2,748,373 + -3.9 2,748,417 + +1.2 2,748,514 + CSW01_12845 0.15 +0.7 2,748,522 - CSW01_12845 0.16 +2.2 2,748,544 + CSW01_12845 0.18 -0.1 2,748,544 + CSW01_12845 0.18 +1.5 2,748,557 + CSW01_12845 0.19 -0.2 2,748,650 - CSW01_12845 0.25 -3.2 2,748,666 + CSW01_12845 0.27 +0.6 2,748,730 + CSW01_12845 0.31 +1.1 2,748,792 - CSW01_12845 0.36 +1.0 2,748,890 + CSW01_12845 0.43 -0.3 2,748,890 + CSW01_12845 0.43 +1.0 2,748,898 - CSW01_12845 0.44 -1.7 2,748,929 + CSW01_12845 0.46 -0.3 2,749,000 + CSW01_12845 0.51 -3.6 2,749,046 - CSW01_12845 0.55 -3.5 2,749,081 - CSW01_12845 0.58 -2.8 2,749,087 + CSW01_12845 0.58 +0.2 2,749,101 - CSW01_12845 0.59 -2.3 2,749,101 - CSW01_12845 0.59 -0.8 2,749,153 + CSW01_12845 0.63 +0.1
Or see this region's nucleotide sequence