Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12840

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12830 and CSW01_12835 are separated by 8 nucleotidesCSW01_12835 and CSW01_12840 are separated by 160 nucleotidesCSW01_12840 and CSW01_12845 are separated by 71 nucleotides CSW01_12830: CSW01_12830 - RNase adaptor protein RapZ, at 2,745,567 to 2,746,427 _12830 CSW01_12835: CSW01_12835 - phosphocarrier protein NPr, at 2,746,436 to 2,746,714 _12835 CSW01_12840: CSW01_12840 - magnesium transporter, at 2,746,875 to 2,748,236 _12840 CSW01_12845: CSW01_12845 - metalloprotease PmbA, at 2,748,308 to 2,749,651 _12845 Position (kb) 2746 2747 2748 2749Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2745.893 kb on + strand, within CSW01_12830at 2745.938 kb on + strand, within CSW01_12830at 2745.979 kb on + strand, within CSW01_12830at 2746.049 kb on + strand, within CSW01_12830at 2746.088 kb on - strand, within CSW01_12830at 2746.152 kb on + strand, within CSW01_12830at 2746.170 kb on + strand, within CSW01_12830at 2746.170 kb on + strand, within CSW01_12830at 2746.178 kb on - strand, within CSW01_12830at 2746.211 kb on - strand, within CSW01_12830at 2746.328 kb on + strand, within CSW01_12830at 2746.328 kb on - strand, within CSW01_12830at 2746.389 kb on - strandat 2746.392 kb on - strandat 2746.396 kb on + strandat 2746.423 kb on + strandat 2746.473 kb on + strand, within CSW01_12835at 2746.473 kb on + strand, within CSW01_12835at 2746.473 kb on + strand, within CSW01_12835at 2746.481 kb on - strand, within CSW01_12835at 2746.517 kb on + strand, within CSW01_12835at 2746.535 kb on + strand, within CSW01_12835at 2746.544 kb on + strand, within CSW01_12835at 2746.547 kb on - strand, within CSW01_12835at 2746.549 kb on + strand, within CSW01_12835at 2746.557 kb on - strand, within CSW01_12835at 2746.559 kb on - strand, within CSW01_12835at 2746.583 kb on + strand, within CSW01_12835at 2746.583 kb on + strand, within CSW01_12835at 2746.591 kb on - strand, within CSW01_12835at 2746.625 kb on - strand, within CSW01_12835at 2746.706 kb on + strandat 2746.709 kb on + strandat 2746.717 kb on + strandat 2746.724 kb on - strandat 2746.839 kb on - strandat 2746.894 kb on - strandat 2746.908 kb on - strandat 2747.037 kb on + strand, within CSW01_12840at 2747.071 kb on + strand, within CSW01_12840at 2747.099 kb on + strand, within CSW01_12840at 2747.099 kb on + strand, within CSW01_12840at 2747.107 kb on - strand, within CSW01_12840at 2747.107 kb on - strand, within CSW01_12840at 2747.220 kb on + strand, within CSW01_12840at 2747.228 kb on - strand, within CSW01_12840at 2747.228 kb on - strand, within CSW01_12840at 2747.255 kb on + strand, within CSW01_12840at 2747.263 kb on - strand, within CSW01_12840at 2747.263 kb on - strand, within CSW01_12840at 2747.265 kb on + strand, within CSW01_12840at 2747.273 kb on - strand, within CSW01_12840at 2747.273 kb on - strand, within CSW01_12840at 2747.278 kb on - strand, within CSW01_12840at 2747.278 kb on - strand, within CSW01_12840at 2747.344 kb on + strand, within CSW01_12840at 2747.344 kb on + strand, within CSW01_12840at 2747.344 kb on + strand, within CSW01_12840at 2747.352 kb on - strand, within CSW01_12840at 2747.400 kb on + strand, within CSW01_12840at 2747.456 kb on + strand, within CSW01_12840at 2747.464 kb on - strand, within CSW01_12840at 2747.488 kb on - strand, within CSW01_12840at 2747.490 kb on + strand, within CSW01_12840at 2747.498 kb on - strand, within CSW01_12840at 2747.498 kb on - strand, within CSW01_12840at 2747.513 kb on + strand, within CSW01_12840at 2747.524 kb on + strand, within CSW01_12840at 2747.715 kb on + strand, within CSW01_12840at 2747.787 kb on + strand, within CSW01_12840at 2747.850 kb on + strand, within CSW01_12840at 2747.874 kb on - strand, within CSW01_12840at 2747.923 kb on - strand, within CSW01_12840at 2748.023 kb on + strand, within CSW01_12840at 2748.031 kb on - strand, within CSW01_12840at 2748.136 kb on - strandat 2748.160 kb on - strandat 2748.162 kb on + strandat 2748.162 kb on + strandat 2748.162 kb on + strandat 2748.162 kb on + strandat 2748.170 kb on - strandat 2748.170 kb on - strandat 2748.170 kb on - strandat 2748.359 kb on - strandat 2748.373 kb on + strandat 2748.417 kb on + strandat 2748.514 kb on + strand, within CSW01_12845at 2748.522 kb on - strand, within CSW01_12845at 2748.544 kb on + strand, within CSW01_12845at 2748.544 kb on + strand, within CSW01_12845at 2748.557 kb on + strand, within CSW01_12845at 2748.650 kb on - strand, within CSW01_12845at 2748.666 kb on + strand, within CSW01_12845at 2748.730 kb on + strand, within CSW01_12845at 2748.792 kb on - strand, within CSW01_12845at 2748.890 kb on + strand, within CSW01_12845at 2748.890 kb on + strand, within CSW01_12845at 2748.898 kb on - strand, within CSW01_12845at 2748.929 kb on + strand, within CSW01_12845at 2749.000 kb on + strand, within CSW01_12845at 2749.046 kb on - strand, within CSW01_12845at 2749.081 kb on - strand, within CSW01_12845at 2749.087 kb on + strand, within CSW01_12845at 2749.101 kb on - strand, within CSW01_12845at 2749.101 kb on - strand, within CSW01_12845at 2749.153 kb on + strand, within CSW01_12845

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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2,745,893 + CSW01_12830 0.38 -0.0
2,745,938 + CSW01_12830 0.43 +1.0
2,745,979 + CSW01_12830 0.48 -2.0
2,746,049 + CSW01_12830 0.56 +0.8
2,746,088 - CSW01_12830 0.61 -0.3
2,746,152 + CSW01_12830 0.68 +2.6
2,746,170 + CSW01_12830 0.70 -0.4
2,746,170 + CSW01_12830 0.70 -3.8
2,746,178 - CSW01_12830 0.71 +1.2
2,746,211 - CSW01_12830 0.75 -1.7
2,746,328 + CSW01_12830 0.88 +0.5
2,746,328 - CSW01_12830 0.88 -0.7
2,746,389 - -1.2
2,746,392 - -0.9
2,746,396 + -0.1
2,746,423 + +0.5
2,746,473 + CSW01_12835 0.13 +0.7
2,746,473 + CSW01_12835 0.13 -0.1
2,746,473 + CSW01_12835 0.13 +0.5
2,746,481 - CSW01_12835 0.16 -0.2
2,746,517 + CSW01_12835 0.29 +0.2
2,746,535 + CSW01_12835 0.35 +0.1
2,746,544 + CSW01_12835 0.39 -2.7
2,746,547 - CSW01_12835 0.40 +0.7
2,746,549 + CSW01_12835 0.41 +0.1
2,746,557 - CSW01_12835 0.43 -2.2
2,746,559 - CSW01_12835 0.44 +2.0
2,746,583 + CSW01_12835 0.53 -0.0
2,746,583 + CSW01_12835 0.53 -0.8
2,746,591 - CSW01_12835 0.56 -3.7
2,746,625 - CSW01_12835 0.68 -2.7
2,746,706 + +0.9
2,746,709 + -1.1
2,746,717 + -1.1
2,746,724 - +0.9
2,746,839 - -0.3
2,746,894 - +1.3
2,746,908 - +0.7
2,747,037 + CSW01_12840 0.12 -0.4
2,747,071 + CSW01_12840 0.14 -0.0
2,747,099 + CSW01_12840 0.16 +1.0
2,747,099 + CSW01_12840 0.16 +1.3
2,747,107 - CSW01_12840 0.17 +0.9
2,747,107 - CSW01_12840 0.17 +1.4
2,747,220 + CSW01_12840 0.25 +0.8
2,747,228 - CSW01_12840 0.26 +0.0
2,747,228 - CSW01_12840 0.26 -1.3
2,747,255 + CSW01_12840 0.28 +1.1
2,747,263 - CSW01_12840 0.28 -0.5
2,747,263 - CSW01_12840 0.28 -1.7
2,747,265 + CSW01_12840 0.29 +0.6
2,747,273 - CSW01_12840 0.29 +3.1
2,747,273 - CSW01_12840 0.29 -0.4
2,747,278 - CSW01_12840 0.30 -0.5
2,747,278 - CSW01_12840 0.30 +1.6
2,747,344 + CSW01_12840 0.34 +0.5
2,747,344 + CSW01_12840 0.34 +1.5
2,747,344 + CSW01_12840 0.34 -2.7
2,747,352 - CSW01_12840 0.35 +0.1
2,747,400 + CSW01_12840 0.39 +3.0
2,747,456 + CSW01_12840 0.43 -0.6
2,747,464 - CSW01_12840 0.43 +0.2
2,747,488 - CSW01_12840 0.45 -2.4
2,747,490 + CSW01_12840 0.45 +0.1
2,747,498 - CSW01_12840 0.46 -0.7
2,747,498 - CSW01_12840 0.46 +1.1
2,747,513 + CSW01_12840 0.47 -0.1
2,747,524 + CSW01_12840 0.48 -3.2
2,747,715 + CSW01_12840 0.62 +0.7
2,747,787 + CSW01_12840 0.67 +0.8
2,747,850 + CSW01_12840 0.72 -0.4
2,747,874 - CSW01_12840 0.73 -2.2
2,747,923 - CSW01_12840 0.77 -2.9
2,748,023 + CSW01_12840 0.84 -2.2
2,748,031 - CSW01_12840 0.85 +0.4
2,748,136 - +1.3
2,748,160 - -1.2
2,748,162 + +0.8
2,748,162 + +1.2
2,748,162 + -0.3
2,748,162 + +2.2
2,748,170 - +0.6
2,748,170 - -1.3
2,748,170 - +1.0
2,748,359 - +0.5
2,748,373 + -3.9
2,748,417 + +1.2
2,748,514 + CSW01_12845 0.15 +0.7
2,748,522 - CSW01_12845 0.16 +2.2
2,748,544 + CSW01_12845 0.18 -0.1
2,748,544 + CSW01_12845 0.18 +1.5
2,748,557 + CSW01_12845 0.19 -0.2
2,748,650 - CSW01_12845 0.25 -3.2
2,748,666 + CSW01_12845 0.27 +0.6
2,748,730 + CSW01_12845 0.31 +1.1
2,748,792 - CSW01_12845 0.36 +1.0
2,748,890 + CSW01_12845 0.43 -0.3
2,748,890 + CSW01_12845 0.43 +1.0
2,748,898 - CSW01_12845 0.44 -1.7
2,748,929 + CSW01_12845 0.46 -0.3
2,749,000 + CSW01_12845 0.51 -3.6
2,749,046 - CSW01_12845 0.55 -3.5
2,749,081 - CSW01_12845 0.58 -2.8
2,749,087 + CSW01_12845 0.58 +0.2
2,749,101 - CSW01_12845 0.59 -2.3
2,749,101 - CSW01_12845 0.59 -0.8
2,749,153 + CSW01_12845 0.63 +0.1

Or see this region's nucleotide sequence