Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12130

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12125 and CSW01_12130 are separated by 353 nucleotidesCSW01_12130 and CSW01_12135 are separated by 104 nucleotides CSW01_12125: CSW01_12125 - protein translocase subunit SecA, at 2,591,807 to 2,594,518 _12125 CSW01_12130: CSW01_12130 - DUF721 domain-containing protein, at 2,594,872 to 2,595,345 _12130 CSW01_12135: CSW01_12135 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,595,450 to 2,596,367 _12135 Position (kb) 2594 2595 2596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2594.751 kb on - strandat 2594.848 kb on - strandat 2595.164 kb on - strand, within CSW01_12130at 2595.191 kb on + strand, within CSW01_12130at 2595.199 kb on - strand, within CSW01_12130at 2595.231 kb on + strand, within CSW01_12130at 2595.349 kb on + strandat 2595.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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2,594,751 - -2.9
2,594,848 - +0.4
2,595,164 - CSW01_12130 0.62 -3.1
2,595,191 + CSW01_12130 0.67 -0.3
2,595,199 - CSW01_12130 0.69 -3.0
2,595,231 + CSW01_12130 0.76 -4.0
2,595,349 + +0.6
2,595,357 - +1.4

Or see this region's nucleotide sequence