Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12100

Experiment: ICP1_phage_2.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep1
2,584,516	+		CSW01_12090	0.40	-0.4
2,584,555	+		CSW01_12090	0.53	-1.5
2,584,560	-		CSW01_12090	0.54	+0.1
2,584,602	-		CSW01_12090	0.67	+0.4
2,584,612	-		CSW01_12090	0.70	-1.9
2,584,612	-		CSW01_12090	0.70	-2.5
2,584,673	+		CSW01_12090	0.90	-2.4
2,584,673	+		CSW01_12090	0.90	+0.6
2,584,714	+				+0.5
2,584,737	+				+0.5
2,584,737	+				-0.3
2,584,743	+				+1.0
2,584,743	+				+0.0
2,584,745	-				+0.2
2,584,751	-				-2.9
2,584,751	-				+0.6
2,584,751	-				-0.5
2,584,751	-				-2.2
2,584,751	-				-0.2
2,584,763	-				+0.2
2,584,925	+				-3.4
2,584,925	+				+0.6
2,584,925	+				+0.8
2,584,933	-				+1.3
2,584,933	-				+0.5
2,584,933	-				-0.7
2,585,002	-		CSW01_12095	0.22	+0.5
2,585,002	-		CSW01_12095	0.22	-2.0
2,585,002	-		CSW01_12095	0.22	+0.7
2,585,017	-		CSW01_12095	0.25	+1.3
2,585,041	-		CSW01_12095	0.30	-1.6
2,585,117	+		CSW01_12095	0.46	-0.9
2,585,125	-		CSW01_12095	0.48	-2.4
2,585,192	-		CSW01_12095	0.62	-2.5
2,585,192	-		CSW01_12095	0.62	-1.2
2,585,209	-		CSW01_12095	0.65	+1.7
2,585,265	+		CSW01_12095	0.77	+2.8
2,585,268	-		CSW01_12095	0.77	+0.8
2,585,328	+				+0.9
2,585,369	-				-3.8
2,585,369	-				+0.9
2,585,448	+				+0.1
2,585,543	+				+1.3
2,585,570	+				+0.1
2,585,570	+				+0.4
2,585,610	+				+1.0
2,585,610	+				+0.1
2,585,610	+				+0.1
2,585,618	-				-1.2
2,585,722	+				-3.9
2,585,745	-				+1.4
2,585,862	-		CSW01_12100	0.12	-0.0
2,585,889	-		CSW01_12100	0.13	-1.4
2,585,898	+		CSW01_12100	0.13	-0.2
2,585,914	+		CSW01_12100	0.14	+2.8
2,585,952	-		CSW01_12100	0.15	-4.0
2,585,969	+		CSW01_12100	0.16	+1.8
2,585,977	-		CSW01_12100	0.16	-0.7
2,586,092	+		CSW01_12100	0.19	+0.6
2,586,163	+		CSW01_12100	0.22	+0.5
2,586,171	-		CSW01_12100	0.22	+0.9
2,586,171	-		CSW01_12100	0.22	+0.4
2,586,308	-		CSW01_12100	0.26	-0.3
2,586,316	+		CSW01_12100	0.26	-1.3
2,586,319	-		CSW01_12100	0.26	+0.6
2,586,321	+		CSW01_12100	0.26	+0.5
2,586,353	-		CSW01_12100	0.27	+0.0
2,586,532	+		CSW01_12100	0.33	+0.2
2,586,550	-		CSW01_12100	0.34	-1.8
2,586,550	-		CSW01_12100	0.34	-1.3
2,586,550	-		CSW01_12100	0.34	-0.9
2,586,651	+		CSW01_12100	0.37	+1.8
2,586,670	+		CSW01_12100	0.37	-2.3
2,586,678	-		CSW01_12100	0.38	-1.9
2,586,698	+		CSW01_12100	0.38	+0.1
2,586,706	-		CSW01_12100	0.38	+3.0
2,586,706	-		CSW01_12100	0.38	-0.4
2,586,708	+		CSW01_12100	0.38	+2.4
2,586,709	+		CSW01_12100	0.38	-2.3
2,586,714	+		CSW01_12100	0.39	+0.7
2,586,842	+		CSW01_12100	0.43	-1.7
2,586,847	+		CSW01_12100	0.43	+2.0
2,586,855	-		CSW01_12100	0.43	-2.4
2,586,897	+		CSW01_12100	0.44	-0.0
2,586,933	-		CSW01_12100	0.45	-2.4
2,586,935	+		CSW01_12100	0.45	+1.2
2,586,935	+		CSW01_12100	0.45	+0.6
2,586,935	+		CSW01_12100	0.45	+0.9
2,586,943	-		CSW01_12100	0.46	-2.8
2,586,943	-		CSW01_12100	0.46	-0.1
2,586,943	-		CSW01_12100	0.46	+0.8
2,586,943	-		CSW01_12100	0.46	+2.6
2,586,965	-		CSW01_12100	0.46	-0.3
2,586,998	-		CSW01_12100	0.47	-0.8
2,586,998	-		CSW01_12100	0.47	-1.3
2,587,039	+		CSW01_12100	0.49	-0.3
2,587,063	+		CSW01_12100	0.49	-2.5
2,587,068	+		CSW01_12100	0.50	-3.0
2,587,071	-		CSW01_12100	0.50	-3.6
2,587,112	-		CSW01_12100	0.51	-0.8
2,587,112	-		CSW01_12100	0.51	-4.4
2,587,116	+		CSW01_12100	0.51	-3.7
2,587,116	+		CSW01_12100	0.51	+1.4
2,587,116	+		CSW01_12100	0.51	+0.1
2,587,124	-		CSW01_12100	0.51	+1.2
2,587,124	-		CSW01_12100	0.51	+0.1
2,587,124	-		CSW01_12100	0.51	-2.7
2,587,124	-		CSW01_12100	0.51	-0.8
2,587,124	-		CSW01_12100	0.51	+1.1
2,587,184	+		CSW01_12100	0.53	+0.1
2,587,184	+		CSW01_12100	0.53	-3.9
2,587,184	+		CSW01_12100	0.53	+1.9
2,587,222	+		CSW01_12100	0.54	+1.8
2,587,240	-		CSW01_12100	0.55	+1.4
2,587,324	+		CSW01_12100	0.58	+0.7
2,587,343	-		CSW01_12100	0.58	-0.8
2,587,389	+		CSW01_12100	0.60	+1.1
2,587,462	-		CSW01_12100	0.62	+1.6
2,587,487	+		CSW01_12100	0.63	-0.3
2,587,487	+		CSW01_12100	0.63	-1.1
2,587,487	+		CSW01_12100	0.63	+1.7
2,587,495	-		CSW01_12100	0.63	+0.1
2,587,495	-		CSW01_12100	0.63	-0.2
2,587,505	-		CSW01_12100	0.63	+4.9
2,587,526	+		CSW01_12100	0.64	+0.2
2,587,540	+		CSW01_12100	0.64	+0.4
2,587,657	-		CSW01_12100	0.68	-1.9
2,587,672	-		CSW01_12100	0.68	+0.5
2,587,697	+		CSW01_12100	0.69	+1.6
2,587,705	+		CSW01_12100	0.69	+0.2
2,587,769	+		CSW01_12100	0.71	+0.2
2,587,769	+		CSW01_12100	0.71	-2.7
2,587,769	+		CSW01_12100	0.71	-0.3
2,587,769	+		CSW01_12100	0.71	+0.3
2,587,777	-		CSW01_12100	0.72	-0.7
2,587,831	-		CSW01_12100	0.73	+2.1
2,587,951	+		CSW01_12100	0.77	+1.0
2,587,959	-		CSW01_12100	0.77	-1.6
2,588,046	+		CSW01_12100	0.80	-1.1
2,588,054	+		CSW01_12100	0.80	-0.1
2,588,095	-		CSW01_12100	0.81	-2.8
2,588,136	+		CSW01_12100	0.83	+0.0
2,588,138	+		CSW01_12100	0.83	+1.3
2,588,145	+		CSW01_12100	0.83	-0.2
2,588,153	-		CSW01_12100	0.83	-1.7
2,588,153	-		CSW01_12100	0.83	+1.8
2,588,186	-		CSW01_12100	0.84	+1.5
2,588,406	+				+2.2
2,588,406	+				+0.2
2,588,406	+				-1.6
2,588,406	+				+0.9
2,588,406	+				-0.8
2,588,409	-				+0.2
2,588,414	-				-3.8
2,588,414	-				-0.2
2,588,414	-				-3.1
2,588,414	-				-3.1
2,588,414	-				+0.9
2,588,477	+				-0.8
2,588,553	-				-0.6
2,588,554	-				+1.4
2,588,577	-				+0.4
2,588,614	-				-3.4
2,588,660	+				+0.8
2,588,660	+				+1.4
2,588,660	+				-3.1
2,588,660	+				-1.4
2,588,660	+				+0.7
2,588,668	-				-1.2
2,588,668	-				-0.9
2,588,668	-				-0.1
2,588,668	-				+1.3
2,588,760	+				-0.5
2,588,778	-				-1.8
2,588,797	+				-2.1
2,588,837	-		CSW01_12105	0.11	+0.4
2,588,837	-		CSW01_12105	0.11	-0.2
2,588,938	-		CSW01_12105	0.20	-1.7
2,588,965	-		CSW01_12105	0.22	-0.7
2,588,970	+		CSW01_12105	0.23	+0.9
2,589,047	-		CSW01_12105	0.29	-1.0
2,589,049	-		CSW01_12105	0.29	+0.8
2,589,114	+		CSW01_12105	0.35	+0.8
2,589,115	-		CSW01_12105	0.35	+2.4
2,589,115	-		CSW01_12105	0.35	+0.5
2,589,122	-		CSW01_12105	0.36	-0.4
2,589,122	-		CSW01_12105	0.36	-0.3
2,589,124	+		CSW01_12105	0.36	+0.9
2,589,141	+		CSW01_12105	0.38	-0.9
2,589,184	+		CSW01_12105	0.41	-2.2
2,589,184	+		CSW01_12105	0.41	-0.5
2,589,192	-		CSW01_12105	0.42	-0.5
2,589,192	-		CSW01_12105	0.42	-2.6
2,589,192	-		CSW01_12105	0.42	-0.7
2,589,192	-		CSW01_12105	0.42	-0.2
2,589,209	-		CSW01_12105	0.44	-1.2
2,589,239	+		CSW01_12105	0.46	+1.5
2,589,329	+		CSW01_12105	0.54	-2.5
2,589,382	+		CSW01_12105	0.59	-1.0
2,589,390	-		CSW01_12105	0.59	+0.4
2,589,413	+		CSW01_12105	0.61	-1.8
2,589,423	+		CSW01_12105	0.62	-0.4
2,589,444	-		CSW01_12105	0.64	+0.0
2,589,477	-		CSW01_12105	0.67	+0.3
2,589,509	-		CSW01_12105	0.70	-3.8
2,589,570	-		CSW01_12105	0.75	+0.9
2,589,570	-		CSW01_12105	0.75	+0.4
2,589,637	+		CSW01_12105	0.81	+0.5
2,589,693	-		CSW01_12105	0.86	-1.2