Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08615

Experiment: ICP1_phage_2.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_08605 and CSW01_08610 are separated by 47 nucleotidesCSW01_08610 and CSW01_08615 are separated by 77 nucleotidesCSW01_08615 and CSW01_08620 are separated by 81 nucleotides CSW01_08605: CSW01_08605 - YgiQ family radical SAM protein, at 1,844,307 to 1,846,676 _08605 CSW01_08610: CSW01_08610 - LysE family translocator, at 1,846,724 to 1,847,338 _08610 CSW01_08615: CSW01_08615 - Lrp/AsnC family transcriptional regulator, at 1,847,416 to 1,847,859 _08615 CSW01_08620: CSW01_08620 - chromosome partition protein MukB, at 1,847,941 to 1,852,416 _08620 Position (kb) 1847 1848Strain fitness (log2 ratio) -3 -2 -1 0 1at 1846.471 kb on + strandat 1846.489 kb on - strandat 1846.568 kb on - strandat 1846.568 kb on - strandat 1846.589 kb on - strandat 1846.589 kb on - strandat 1846.798 kb on + strand, within CSW01_08610at 1846.947 kb on - strand, within CSW01_08610at 1847.014 kb on - strand, within CSW01_08610at 1847.080 kb on + strand, within CSW01_08610at 1847.103 kb on + strand, within CSW01_08610at 1847.506 kb on + strand, within CSW01_08615at 1847.510 kb on + strand, within CSW01_08615at 1847.510 kb on + strand, within CSW01_08615at 1847.518 kb on - strand, within CSW01_08615at 1847.518 kb on - strand, within CSW01_08615at 1847.657 kb on + strand, within CSW01_08615at 1847.657 kb on + strand, within CSW01_08615at 1847.657 kb on + strand, within CSW01_08615at 1847.657 kb on + strand, within CSW01_08615at 1847.665 kb on - strand, within CSW01_08615at 1847.665 kb on - strand, within CSW01_08615at 1847.665 kb on - strand, within CSW01_08615at 1847.779 kb on + strand, within CSW01_08615at 1847.933 kb on + strandat 1847.933 kb on + strandat 1847.945 kb on + strandat 1847.985 kb on - strandat 1848.140 kb on + strandat 1848.148 kb on - strandat 1848.277 kb on - strandat 1848.285 kb on - strandat 1848.291 kb on + strandat 1848.378 kb on + strandat 1848.386 kb on - strandat 1848.386 kb on - strandat 1848.413 kb on - strand, within CSW01_08620at 1848.430 kb on + strand, within CSW01_08620at 1848.461 kb on + strand, within CSW01_08620at 1848.469 kb on - strand, within CSW01_08620at 1848.514 kb on - strand, within CSW01_08620at 1848.545 kb on - strand, within CSW01_08620at 1848.599 kb on + strand, within CSW01_08620at 1848.599 kb on + strand, within CSW01_08620at 1848.607 kb on - strand, within CSW01_08620at 1848.607 kb on - strand, within CSW01_08620at 1848.617 kb on - strand, within CSW01_08620at 1848.630 kb on + strand, within CSW01_08620at 1848.630 kb on + strand, within CSW01_08620at 1848.638 kb on - strand, within CSW01_08620at 1848.707 kb on - strand, within CSW01_08620at 1848.762 kb on - strand, within CSW01_08620at 1848.859 kb on - strand, within CSW01_08620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
remove
1,846,471 + -0.4
1,846,489 - +0.2
1,846,568 - +0.7
1,846,568 - +0.2
1,846,589 - -0.4
1,846,589 - -0.6
1,846,798 + CSW01_08610 0.12 -0.5
1,846,947 - CSW01_08610 0.36 +0.1
1,847,014 - CSW01_08610 0.47 +1.3
1,847,080 + CSW01_08610 0.58 -2.8
1,847,103 + CSW01_08610 0.62 +1.3
1,847,506 + CSW01_08615 0.20 +0.3
1,847,510 + CSW01_08615 0.21 -0.0
1,847,510 + CSW01_08615 0.21 -0.1
1,847,518 - CSW01_08615 0.23 -2.3
1,847,518 - CSW01_08615 0.23 -0.3
1,847,657 + CSW01_08615 0.54 +1.5
1,847,657 + CSW01_08615 0.54 -0.6
1,847,657 + CSW01_08615 0.54 +0.6
1,847,657 + CSW01_08615 0.54 +1.1
1,847,665 - CSW01_08615 0.56 +1.7
1,847,665 - CSW01_08615 0.56 +0.4
1,847,665 - CSW01_08615 0.56 -1.2
1,847,779 + CSW01_08615 0.82 +0.7
1,847,933 + +0.7
1,847,933 + -0.5
1,847,945 + -2.0
1,847,985 - +0.3
1,848,140 + +0.6
1,848,148 - -0.9
1,848,277 - -2.4
1,848,285 - -0.4
1,848,291 + +0.9
1,848,378 + -0.2
1,848,386 - -3.2
1,848,386 - -1.0
1,848,413 - CSW01_08620 0.11 -0.6
1,848,430 + CSW01_08620 0.11 -2.4
1,848,461 + CSW01_08620 0.12 -1.5
1,848,469 - CSW01_08620 0.12 +1.3
1,848,514 - CSW01_08620 0.13 -1.0
1,848,545 - CSW01_08620 0.13 -0.5
1,848,599 + CSW01_08620 0.15 -0.0
1,848,599 + CSW01_08620 0.15 -2.8
1,848,607 - CSW01_08620 0.15 -2.3
1,848,607 - CSW01_08620 0.15 -1.0
1,848,617 - CSW01_08620 0.15 +1.1
1,848,630 + CSW01_08620 0.15 -0.0
1,848,630 + CSW01_08620 0.15 -1.5
1,848,638 - CSW01_08620 0.16 -2.3
1,848,707 - CSW01_08620 0.17 -1.1
1,848,762 - CSW01_08620 0.18 -0.5
1,848,859 - CSW01_08620 0.21 -1.8

Or see this region's nucleotide sequence