Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07855 and CSW01_07860 overlap by 1 nucleotides CSW01_07860 and CSW01_07865 are separated by 3 nucleotides
CSW01_07855: CSW01_07855 - TolC family protein, at 1,675,501 to 1,676,760
_07855
CSW01_07860: CSW01_07860 - ABC transporter permease, at 1,676,760 to 1,677,974
_07860
CSW01_07865: CSW01_07865 - ABC transporter permease, at 1,677,978 to 1,679,255
_07865
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1675.762 kb on - strand, within CSW01_07855 at 1675.805 kb on - strand, within CSW01_07855 at 1675.971 kb on + strand, within CSW01_07855 at 1675.971 kb on + strand, within CSW01_07855 at 1675.974 kb on - strand, within CSW01_07855 at 1675.979 kb on - strand, within CSW01_07855 at 1675.979 kb on - strand, within CSW01_07855 at 1675.979 kb on - strand, within CSW01_07855 at 1676.075 kb on - strand, within CSW01_07855 at 1676.168 kb on + strand, within CSW01_07855 at 1676.210 kb on + strand, within CSW01_07855 at 1676.218 kb on - strand, within CSW01_07855 at 1676.270 kb on + strand, within CSW01_07855 at 1676.276 kb on - strand, within CSW01_07855 at 1676.318 kb on - strand, within CSW01_07855 at 1676.557 kb on + strand, within CSW01_07855 at 1676.565 kb on - strand, within CSW01_07855 at 1676.747 kb on - strand at 1676.891 kb on - strand, within CSW01_07860 at 1676.891 kb on - strand, within CSW01_07860 at 1676.893 kb on - strand, within CSW01_07860 at 1676.893 kb on - strand, within CSW01_07860 at 1676.900 kb on + strand, within CSW01_07860 at 1676.944 kb on + strand, within CSW01_07860 at 1676.949 kb on + strand, within CSW01_07860 at 1677.025 kb on - strand, within CSW01_07860 at 1677.052 kb on + strand, within CSW01_07860 at 1677.078 kb on - strand, within CSW01_07860 at 1677.119 kb on + strand, within CSW01_07860 at 1677.127 kb on - strand, within CSW01_07860 at 1677.127 kb on - strand, within CSW01_07860 at 1677.138 kb on + strand, within CSW01_07860 at 1677.446 kb on - strand, within CSW01_07860 at 1677.584 kb on - strand, within CSW01_07860 at 1677.616 kb on - strand, within CSW01_07860 at 1677.708 kb on - strand, within CSW01_07860 at 1677.736 kb on - strand, within CSW01_07860 at 1677.773 kb on - strand, within CSW01_07860 at 1677.775 kb on + strand, within CSW01_07860 at 1678.035 kb on - strand at 1678.039 kb on + strand at 1678.189 kb on + strand, within CSW01_07865 at 1678.209 kb on - strand, within CSW01_07865 at 1678.236 kb on + strand, within CSW01_07865 at 1678.244 kb on - strand, within CSW01_07865 at 1678.393 kb on + strand, within CSW01_07865 at 1678.393 kb on + strand, within CSW01_07865 at 1678.401 kb on - strand, within CSW01_07865 at 1678.401 kb on - strand, within CSW01_07865 at 1678.453 kb on + strand, within CSW01_07865 at 1678.453 kb on + strand, within CSW01_07865 at 1678.559 kb on + strand, within CSW01_07865 at 1678.559 kb on + strand, within CSW01_07865 at 1678.606 kb on - strand, within CSW01_07865 at 1678.619 kb on - strand, within CSW01_07865 at 1678.631 kb on + strand, within CSW01_07865 at 1678.631 kb on + strand, within CSW01_07865 at 1678.631 kb on + strand, within CSW01_07865 at 1678.639 kb on - strand, within CSW01_07865 at 1678.639 kb on - strand, within CSW01_07865 at 1678.832 kb on + strand, within CSW01_07865 at 1678.839 kb on + strand, within CSW01_07865 at 1678.887 kb on + strand, within CSW01_07865 at 1678.962 kb on + strand, within CSW01_07865 at 1678.970 kb on + strand, within CSW01_07865
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 1,675,762 - CSW01_07855 0.21 -0.6 1,675,805 - CSW01_07855 0.24 -0.5 1,675,971 + CSW01_07855 0.37 +1.8 1,675,971 + CSW01_07855 0.37 -2.5 1,675,974 - CSW01_07855 0.38 +0.3 1,675,979 - CSW01_07855 0.38 -2.0 1,675,979 - CSW01_07855 0.38 -1.2 1,675,979 - CSW01_07855 0.38 -1.8 1,676,075 - CSW01_07855 0.46 -1.8 1,676,168 + CSW01_07855 0.53 -1.4 1,676,210 + CSW01_07855 0.56 +0.4 1,676,218 - CSW01_07855 0.57 +0.5 1,676,270 + CSW01_07855 0.61 -1.0 1,676,276 - CSW01_07855 0.62 +0.7 1,676,318 - CSW01_07855 0.65 +0.9 1,676,557 + CSW01_07855 0.84 +0.9 1,676,565 - CSW01_07855 0.84 -0.3 1,676,747 - +0.7 1,676,891 - CSW01_07860 0.11 +0.3 1,676,891 - CSW01_07860 0.11 +1.0 1,676,893 - CSW01_07860 0.11 +0.6 1,676,893 - CSW01_07860 0.11 -0.8 1,676,900 + CSW01_07860 0.12 -2.3 1,676,944 + CSW01_07860 0.15 +0.6 1,676,949 + CSW01_07860 0.16 -1.3 1,677,025 - CSW01_07860 0.22 -1.7 1,677,052 + CSW01_07860 0.24 -1.4 1,677,078 - CSW01_07860 0.26 -0.6 1,677,119 + CSW01_07860 0.30 +0.1 1,677,127 - CSW01_07860 0.30 -0.1 1,677,127 - CSW01_07860 0.30 +0.2 1,677,138 + CSW01_07860 0.31 +0.2 1,677,446 - CSW01_07860 0.56 +0.2 1,677,584 - CSW01_07860 0.68 -0.0 1,677,616 - CSW01_07860 0.70 -2.1 1,677,708 - CSW01_07860 0.78 +1.0 1,677,736 - CSW01_07860 0.80 -1.1 1,677,773 - CSW01_07860 0.83 +0.9 1,677,775 + CSW01_07860 0.84 -0.5 1,678,035 - -0.6 1,678,039 + -1.2 1,678,189 + CSW01_07865 0.17 +0.3 1,678,209 - CSW01_07865 0.18 +0.6 1,678,236 + CSW01_07865 0.20 +0.1 1,678,244 - CSW01_07865 0.21 -0.3 1,678,393 + CSW01_07865 0.32 +0.7 1,678,393 + CSW01_07865 0.32 -0.4 1,678,401 - CSW01_07865 0.33 -0.7 1,678,401 - CSW01_07865 0.33 +1.1 1,678,453 + CSW01_07865 0.37 -0.5 1,678,453 + CSW01_07865 0.37 +0.5 1,678,559 + CSW01_07865 0.45 +0.9 1,678,559 + CSW01_07865 0.45 -0.6 1,678,606 - CSW01_07865 0.49 -2.4 1,678,619 - CSW01_07865 0.50 -0.2 1,678,631 + CSW01_07865 0.51 -0.0 1,678,631 + CSW01_07865 0.51 +0.4 1,678,631 + CSW01_07865 0.51 -0.5 1,678,639 - CSW01_07865 0.52 +0.2 1,678,639 - CSW01_07865 0.52 -2.0 1,678,832 + CSW01_07865 0.67 -4.0 1,678,839 + CSW01_07865 0.67 -0.0 1,678,887 + CSW01_07865 0.71 -1.7 1,678,962 + CSW01_07865 0.77 -0.1 1,678,970 + CSW01_07865 0.78 -0.1
Or see this region's nucleotide sequence