Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07495

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07490 and CSW01_07495 are separated by 73 nucleotidesCSW01_07495 and CSW01_07500 are separated by 188 nucleotidesCSW01_07500 and CSW01_07505 are separated by 33 nucleotides CSW01_07490: CSW01_07490 - dihydroorotate dehydrogenase (quinone), at 1,595,249 to 1,596,259 _07490 CSW01_07495: CSW01_07495 - NAD-glutamate dehydrogenase, at 1,596,333 to 1,601,174 _07495 CSW01_07500: CSW01_07500 - DUF2835 domain-containing protein, at 1,601,363 to 1,601,599 _07500 CSW01_07505: CSW01_07505 - aminopeptidase N, at 1,601,633 to 1,604,239 _07505 Position (kb) 1596 1597 1598 1599 1600 1601 1602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1595.336 kb on + strandat 1595.372 kb on + strand, within CSW01_07490at 1595.436 kb on - strand, within CSW01_07490at 1595.454 kb on + strand, within CSW01_07490at 1595.702 kb on + strand, within CSW01_07490at 1595.719 kb on + strand, within CSW01_07490at 1595.727 kb on - strand, within CSW01_07490at 1595.727 kb on - strand, within CSW01_07490at 1595.761 kb on - strand, within CSW01_07490at 1595.761 kb on - strand, within CSW01_07490at 1595.761 kb on - strand, within CSW01_07490at 1595.980 kb on - strand, within CSW01_07490at 1595.989 kb on + strand, within CSW01_07490at 1596.043 kb on + strand, within CSW01_07490at 1596.101 kb on + strand, within CSW01_07490at 1596.101 kb on + strand, within CSW01_07490at 1596.109 kb on - strand, within CSW01_07490at 1596.526 kb on + strandat 1596.544 kb on - strandat 1596.648 kb on + strandat 1596.735 kb on + strandat 1596.743 kb on - strandat 1596.743 kb on - strandat 1596.900 kb on + strand, within CSW01_07495at 1596.932 kb on - strand, within CSW01_07495at 1596.994 kb on + strand, within CSW01_07495at 1597.011 kb on + strand, within CSW01_07495at 1597.011 kb on + strand, within CSW01_07495at 1597.117 kb on - strand, within CSW01_07495at 1597.117 kb on - strand, within CSW01_07495at 1597.117 kb on - strand, within CSW01_07495at 1597.152 kb on - strand, within CSW01_07495at 1597.408 kb on - strand, within CSW01_07495at 1597.651 kb on + strand, within CSW01_07495at 1597.680 kb on + strand, within CSW01_07495at 1597.881 kb on + strand, within CSW01_07495at 1598.108 kb on + strand, within CSW01_07495at 1598.108 kb on + strand, within CSW01_07495at 1598.108 kb on + strand, within CSW01_07495at 1598.108 kb on + strand, within CSW01_07495at 1598.116 kb on - strand, within CSW01_07495at 1598.116 kb on - strand, within CSW01_07495at 1598.437 kb on - strand, within CSW01_07495at 1598.447 kb on - strand, within CSW01_07495at 1598.731 kb on + strand, within CSW01_07495at 1598.731 kb on + strand, within CSW01_07495at 1598.739 kb on - strand, within CSW01_07495at 1598.739 kb on - strand, within CSW01_07495at 1598.739 kb on - strand, within CSW01_07495at 1598.739 kb on - strand, within CSW01_07495at 1598.795 kb on - strand, within CSW01_07495at 1599.129 kb on - strand, within CSW01_07495at 1599.139 kb on - strand, within CSW01_07495at 1599.470 kb on + strand, within CSW01_07495at 1599.478 kb on - strand, within CSW01_07495at 1599.478 kb on - strand, within CSW01_07495at 1599.478 kb on - strand, within CSW01_07495at 1599.506 kb on + strand, within CSW01_07495at 1599.514 kb on - strand, within CSW01_07495at 1599.568 kb on + strand, within CSW01_07495at 1599.586 kb on - strand, within CSW01_07495at 1599.717 kb on - strand, within CSW01_07495at 1599.855 kb on - strand, within CSW01_07495at 1599.887 kb on + strand, within CSW01_07495at 1599.895 kb on - strand, within CSW01_07495at 1600.000 kb on - strand, within CSW01_07495at 1600.017 kb on - strand, within CSW01_07495at 1600.158 kb on + strand, within CSW01_07495at 1600.176 kb on + strand, within CSW01_07495at 1600.189 kb on - strand, within CSW01_07495at 1600.191 kb on + strand, within CSW01_07495at 1600.191 kb on + strand, within CSW01_07495at 1600.191 kb on + strand, within CSW01_07495at 1600.199 kb on - strand, within CSW01_07495at 1600.199 kb on - strand, within CSW01_07495at 1600.199 kb on - strand, within CSW01_07495at 1600.229 kb on - strand, within CSW01_07495at 1600.375 kb on - strand, within CSW01_07495at 1600.990 kb on + strandat 1600.992 kb on + strandat 1600.993 kb on - strandat 1601.038 kb on - strandat 1601.038 kb on - strandat 1601.058 kb on + strandat 1601.063 kb on + strandat 1601.066 kb on - strandat 1601.178 kb on - strandat 1601.178 kb on - strandat 1601.304 kb on + strandat 1601.304 kb on + strandat 1601.337 kb on + strandat 1601.370 kb on + strandat 1601.511 kb on - strand, within CSW01_07500at 1601.585 kb on + strandat 1601.732 kb on - strandat 1601.734 kb on + strandat 1601.791 kb on + strandat 1601.827 kb on - strandat 1601.988 kb on - strand, within CSW01_07505at 1601.989 kb on - strand, within CSW01_07505at 1601.995 kb on + strand, within CSW01_07505at 1602.055 kb on - strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.161 kb on + strand, within CSW01_07505at 1602.169 kb on - strand, within CSW01_07505at 1602.169 kb on - strand, within CSW01_07505at 1602.169 kb on - strand, within CSW01_07505at 1602.169 kb on - strand, within CSW01_07505

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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1,595,336 + -1.4
1,595,372 + CSW01_07490 0.12 -1.2
1,595,436 - CSW01_07490 0.18 +1.0
1,595,454 + CSW01_07490 0.20 -0.2
1,595,702 + CSW01_07490 0.45 +0.6
1,595,719 + CSW01_07490 0.46 +0.4
1,595,727 - CSW01_07490 0.47 +0.4
1,595,727 - CSW01_07490 0.47 -1.5
1,595,761 - CSW01_07490 0.51 +0.7
1,595,761 - CSW01_07490 0.51 -1.5
1,595,761 - CSW01_07490 0.51 -1.7
1,595,980 - CSW01_07490 0.72 -2.9
1,595,989 + CSW01_07490 0.73 -1.3
1,596,043 + CSW01_07490 0.79 +0.3
1,596,101 + CSW01_07490 0.84 -1.2
1,596,101 + CSW01_07490 0.84 -0.3
1,596,109 - CSW01_07490 0.85 -1.3
1,596,526 + +0.4
1,596,544 - +1.1
1,596,648 + +0.2
1,596,735 + +1.1
1,596,743 - -0.7
1,596,743 - -0.4
1,596,900 + CSW01_07495 0.12 +0.2
1,596,932 - CSW01_07495 0.12 +0.2
1,596,994 + CSW01_07495 0.14 +0.2
1,597,011 + CSW01_07495 0.14 -0.5
1,597,011 + CSW01_07495 0.14 -0.0
1,597,117 - CSW01_07495 0.16 -1.8
1,597,117 - CSW01_07495 0.16 +0.6
1,597,117 - CSW01_07495 0.16 -1.5
1,597,152 - CSW01_07495 0.17 +0.7
1,597,408 - CSW01_07495 0.22 +0.7
1,597,651 + CSW01_07495 0.27 -0.3
1,597,680 + CSW01_07495 0.28 -1.9
1,597,881 + CSW01_07495 0.32 -1.9
1,598,108 + CSW01_07495 0.37 -0.4
1,598,108 + CSW01_07495 0.37 -2.0
1,598,108 + CSW01_07495 0.37 +1.6
1,598,108 + CSW01_07495 0.37 +0.2
1,598,116 - CSW01_07495 0.37 -0.1
1,598,116 - CSW01_07495 0.37 +0.5
1,598,437 - CSW01_07495 0.43 +0.0
1,598,447 - CSW01_07495 0.44 +0.5
1,598,731 + CSW01_07495 0.50 +0.5
1,598,731 + CSW01_07495 0.50 -0.7
1,598,739 - CSW01_07495 0.50 -1.7
1,598,739 - CSW01_07495 0.50 -1.5
1,598,739 - CSW01_07495 0.50 -0.7
1,598,739 - CSW01_07495 0.50 -0.1
1,598,795 - CSW01_07495 0.51 -0.0
1,599,129 - CSW01_07495 0.58 -0.1
1,599,139 - CSW01_07495 0.58 -2.0
1,599,470 + CSW01_07495 0.65 -1.7
1,599,478 - CSW01_07495 0.65 -0.6
1,599,478 - CSW01_07495 0.65 +1.3
1,599,478 - CSW01_07495 0.65 -0.2
1,599,506 + CSW01_07495 0.66 +0.8
1,599,514 - CSW01_07495 0.66 +0.9
1,599,568 + CSW01_07495 0.67 -2.4
1,599,586 - CSW01_07495 0.67 +0.2
1,599,717 - CSW01_07495 0.70 -0.2
1,599,855 - CSW01_07495 0.73 -0.9
1,599,887 + CSW01_07495 0.73 +0.5
1,599,895 - CSW01_07495 0.74 -1.9
1,600,000 - CSW01_07495 0.76 -3.6
1,600,017 - CSW01_07495 0.76 +0.4
1,600,158 + CSW01_07495 0.79 +0.9
1,600,176 + CSW01_07495 0.79 -2.5
1,600,189 - CSW01_07495 0.80 -1.3
1,600,191 + CSW01_07495 0.80 +0.7
1,600,191 + CSW01_07495 0.80 +0.6
1,600,191 + CSW01_07495 0.80 -2.1
1,600,199 - CSW01_07495 0.80 -2.3
1,600,199 - CSW01_07495 0.80 -3.9
1,600,199 - CSW01_07495 0.80 +0.2
1,600,229 - CSW01_07495 0.80 -0.9
1,600,375 - CSW01_07495 0.83 +0.1
1,600,990 + -1.7
1,600,992 + -1.6
1,600,993 - -1.5
1,601,038 - -1.1
1,601,038 - -0.3
1,601,058 + -0.6
1,601,063 + -3.4
1,601,066 - +0.4
1,601,178 - +0.8
1,601,178 - -0.2
1,601,304 + +0.8
1,601,304 + +1.6
1,601,337 + -2.5
1,601,370 + -2.5
1,601,511 - CSW01_07500 0.62 +0.7
1,601,585 + +0.5
1,601,732 - +0.4
1,601,734 + +2.8
1,601,791 + +1.2
1,601,827 - -0.7
1,601,988 - CSW01_07505 0.14 -0.1
1,601,989 - CSW01_07505 0.14 -2.5
1,601,995 + CSW01_07505 0.14 -0.7
1,602,055 - CSW01_07505 0.16 -1.3
1,602,161 + CSW01_07505 0.20 +1.2
1,602,161 + CSW01_07505 0.20 +1.1
1,602,161 + CSW01_07505 0.20 -0.4
1,602,161 + CSW01_07505 0.20 +1.1
1,602,161 + CSW01_07505 0.20 +0.5
1,602,161 + CSW01_07505 0.20 +1.7
1,602,169 - CSW01_07505 0.21 -0.2
1,602,169 - CSW01_07505 0.21 -1.3
1,602,169 - CSW01_07505 0.21 +0.0
1,602,169 - CSW01_07505 0.21 -0.0

Or see this region's nucleotide sequence