Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07100

Experiment: ICP1_phage_2.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep1
1,511,514	-		CSW01_07095	0.71	+2.8
1,511,839	-		CSW01_07095	0.80	-2.3
1,511,851	+		CSW01_07095	0.81	+0.7
1,511,917	-		CSW01_07095	0.83	+1.4
1,512,012	+		CSW01_07095	0.85	+0.1
1,512,076	+		CSW01_07095	0.87	-0.7
1,512,110	-		CSW01_07095	0.88	+0.6
1,512,191	+				+0.0
1,512,197	-				-0.4
1,512,226	+				+0.2
1,512,226	+				-1.8
1,512,226	+				+0.2
1,512,226	+				-0.8
1,512,226	+				+0.9
1,512,234	-				-1.5
1,512,234	-				+0.5
1,512,234	-				-0.7
1,512,234	-				+2.4
1,512,234	-				-2.5
1,512,234	-				-0.7
1,512,234	-				-1.0
1,512,234	-				+1.0
1,512,236	+				-2.3
1,512,236	+				+1.2
1,512,244	-				-0.5
1,512,244	-				+0.9
1,512,262	+				+0.0
1,512,270	-				+0.7
1,512,298	-				+1.2
1,512,310	+				+0.5
1,512,333	-				-1.0
1,512,372	+				+0.7
1,512,409	+				+0.2
1,512,474	+				-1.5
1,512,474	+				-1.2
1,512,474	+				+0.5
1,512,474	+				+0.2
1,512,474	+				-0.0
1,512,474	+				-0.2
1,512,474	+				+0.2
1,512,482	-				+0.1
1,512,482	-				+1.1
1,512,482	-				-0.4
1,512,482	-				-0.9
1,512,482	-				+0.1
1,512,482	-				-2.6
1,512,484	+				+0.1
1,512,484	+				-0.7
1,512,562	-				+0.7
1,512,576	+				+0.4
1,512,586	-		CSW01_07100	0.10	-1.3
1,512,704	+		CSW01_07100	0.24	-0.6
1,512,704	+		CSW01_07100	0.24	+0.8
1,512,712	-		CSW01_07100	0.25	-1.4
1,512,712	-		CSW01_07100	0.25	-1.8
1,512,712	-		CSW01_07100	0.25	-0.9
1,512,715	+		CSW01_07100	0.25	+0.8
1,512,747	-		CSW01_07100	0.29	+0.6
1,512,749	+		CSW01_07100	0.29	+0.1
1,512,749	+		CSW01_07100	0.29	+1.7
1,512,776	+		CSW01_07100	0.32	-1.8
1,512,808	+		CSW01_07100	0.36	-1.8
1,512,808	+		CSW01_07100	0.36	+0.7
1,512,815	-		CSW01_07100	0.37	-0.7
1,512,946	+		CSW01_07100	0.52	-0.6
1,513,100	-		CSW01_07100	0.70	+0.5
1,513,183	-		CSW01_07100	0.79	+0.1
1,513,193	-		CSW01_07100	0.81	-2.4
1,513,202	+		CSW01_07100	0.82	+1.5
1,513,210	-		CSW01_07100	0.83	-0.0
1,513,210	-		CSW01_07100	0.83	-0.2
1,513,240	+		CSW01_07100	0.86	-0.1
1,513,317	-				+0.0
1,513,352	+				+1.0
1,513,388	+				-2.0
1,513,388	+				+0.6
1,513,396	-				+1.5
1,513,396	-				-1.1
1,513,396	-				+1.3
1,513,396	-				+0.6
1,513,401	-				-0.6
1,513,487	+				+1.5
1,513,495	-				-1.7
1,513,513	-				-3.0
1,513,538	+				+0.3
1,513,620	+		CSW01_07105	0.13	-1.2
1,513,626	-		CSW01_07105	0.14	-2.5
1,513,754	+		CSW01_07105	0.20	-1.3
1,513,762	+		CSW01_07105	0.21	+0.0
1,513,769	+		CSW01_07105	0.21	-2.1
1,513,770	-		CSW01_07105	0.21	-0.4
1,513,777	-		CSW01_07105	0.22	+0.3
1,513,796	+		CSW01_07105	0.23	-1.6
1,513,796	+		CSW01_07105	0.23	+1.3
1,513,803	-		CSW01_07105	0.23	+0.7
1,513,804	-		CSW01_07105	0.23	+0.4
1,513,807	+		CSW01_07105	0.23	+1.0
1,513,807	+		CSW01_07105	0.23	+0.4
1,513,807	+		CSW01_07105	0.23	+0.5
1,513,807	+		CSW01_07105	0.23	-0.2
1,513,807	+		CSW01_07105	0.23	+0.5
1,513,807	+		CSW01_07105	0.23	-1.9
1,513,807	+		CSW01_07105	0.23	+0.9
1,513,815	-		CSW01_07105	0.24	+1.0
1,513,815	-		CSW01_07105	0.24	-0.6
1,513,815	-		CSW01_07105	0.24	-1.3
1,513,820	-		CSW01_07105	0.24	+0.2
1,513,849	+		CSW01_07105	0.25	+0.7
1,513,850	-		CSW01_07105	0.25	+1.4
1,513,889	+		CSW01_07105	0.27	+1.1
1,513,895	+		CSW01_07105	0.28	+1.2
1,513,896	+		CSW01_07105	0.28	+3.3
1,513,897	+		CSW01_07105	0.28	-2.6
1,513,897	+		CSW01_07105	0.28	-1.2
1,513,903	+		CSW01_07105	0.28	-1.4
1,513,904	-		CSW01_07105	0.28	+0.2
1,513,904	-		CSW01_07105	0.28	-1.2
1,513,904	-		CSW01_07105	0.28	-2.8
1,513,958	+		CSW01_07105	0.31	-0.9
1,514,062	-		CSW01_07105	0.36	+0.2
1,514,073	+		CSW01_07105	0.37	-3.0
1,514,093	-		CSW01_07105	0.38	-0.4
1,514,099	+		CSW01_07105	0.38	+0.4
1,514,099	+		CSW01_07105	0.38	-3.0
1,514,099	+		CSW01_07105	0.38	+0.2
1,514,099	+		CSW01_07105	0.38	+0.5
1,514,107	-		CSW01_07105	0.39	-0.4
1,514,107	-		CSW01_07105	0.39	-0.1
1,514,107	-		CSW01_07105	0.39	-0.5
1,514,107	-		CSW01_07105	0.39	-0.5
1,514,107	-		CSW01_07105	0.39	-2.7
1,514,107	-		CSW01_07105	0.39	-3.0
1,514,107	-		CSW01_07105	0.39	+0.6
1,514,107	-		CSW01_07105	0.39	+0.4
1,514,111	+		CSW01_07105	0.39	-1.7
1,514,111	+		CSW01_07105	0.39	+0.4
1,514,119	-		CSW01_07105	0.39	+0.1
1,514,129	+		CSW01_07105	0.40	+2.3
1,514,138	-		CSW01_07105	0.40	-1.6
1,514,139	+		CSW01_07105	0.40	+0.5
1,514,174	-		CSW01_07105	0.42	-2.3
1,514,175	-		CSW01_07105	0.42	+0.7
1,514,176	+		CSW01_07105	0.42	+0.3
1,514,183	+		CSW01_07105	0.43	+0.2
1,514,244	+		CSW01_07105	0.46	-3.1
1,514,244	+		CSW01_07105	0.46	+0.2
1,514,276	+		CSW01_07105	0.47	-1.5
1,514,276	+		CSW01_07105	0.47	-1.7
1,514,284	+		CSW01_07105	0.48	-2.1
1,514,310	-		CSW01_07105	0.49	-1.3
1,514,315	+		CSW01_07105	0.49	+1.8
1,514,315	+		CSW01_07105	0.49	-0.4
1,514,320	-		CSW01_07105	0.50	+0.2
1,514,327	+		CSW01_07105	0.50	+0.4
1,514,327	+		CSW01_07105	0.50	+1.8
1,514,327	+		CSW01_07105	0.50	+0.2
1,514,327	+		CSW01_07105	0.50	+0.5
1,514,335	-		CSW01_07105	0.51	+1.1
1,514,335	-		CSW01_07105	0.51	-0.0
1,514,335	-		CSW01_07105	0.51	+0.2
1,514,335	-		CSW01_07105	0.51	-1.6
1,514,337	+		CSW01_07105	0.51	-1.8
1,514,347	+		CSW01_07105	0.51	-0.6
1,514,347	+		CSW01_07105	0.51	-3.3
1,514,347	+		CSW01_07105	0.51	+1.2
1,514,355	-		CSW01_07105	0.52	-0.2