Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06535

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06530 and CSW01_06535 are separated by 211 nucleotidesCSW01_06535 and CSW01_06540 overlap by 29 nucleotides CSW01_06530: CSW01_06530 - aromatic amino acid aminotransferase, at 1,370,276 to 1,371,472 _06530 CSW01_06535: CSW01_06535 - hypothetical protein, at 1,371,684 to 1,371,869 _06535 CSW01_06540: CSW01_06540 - metal-dependent phosphohydrolase, at 1,371,841 to 1,373,319 _06540 Position (kb) 1371 1372Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1370.727 kb on - strand, within CSW01_06530at 1370.785 kb on + strand, within CSW01_06530at 1370.821 kb on - strand, within CSW01_06530at 1370.868 kb on + strand, within CSW01_06530at 1370.896 kb on - strand, within CSW01_06530at 1370.896 kb on - strand, within CSW01_06530at 1370.896 kb on - strand, within CSW01_06530at 1371.057 kb on + strand, within CSW01_06530at 1371.057 kb on + strand, within CSW01_06530at 1371.065 kb on - strand, within CSW01_06530at 1371.069 kb on + strand, within CSW01_06530at 1371.069 kb on + strand, within CSW01_06530at 1371.077 kb on - strand, within CSW01_06530at 1371.162 kb on - strand, within CSW01_06530at 1371.256 kb on + strand, within CSW01_06530at 1371.297 kb on + strand, within CSW01_06530at 1371.305 kb on - strand, within CSW01_06530at 1371.305 kb on - strand, within CSW01_06530at 1371.323 kb on + strand, within CSW01_06530at 1371.664 kb on - strandat 1371.825 kb on + strand, within CSW01_06535at 1371.826 kb on + strand, within CSW01_06535at 1371.851 kb on + strandat 1371.927 kb on + strandat 1372.021 kb on + strand, within CSW01_06540at 1372.084 kb on - strand, within CSW01_06540at 1372.249 kb on - strand, within CSW01_06540at 1372.289 kb on - strand, within CSW01_06540at 1372.343 kb on - strand, within CSW01_06540at 1372.462 kb on + strand, within CSW01_06540at 1372.497 kb on + strand, within CSW01_06540at 1372.497 kb on + strand, within CSW01_06540at 1372.504 kb on - strand, within CSW01_06540at 1372.505 kb on - strand, within CSW01_06540at 1372.505 kb on - strand, within CSW01_06540at 1372.505 kb on - strand, within CSW01_06540at 1372.505 kb on - strand, within CSW01_06540at 1372.507 kb on + strand, within CSW01_06540at 1372.540 kb on + strand, within CSW01_06540at 1372.612 kb on + strand, within CSW01_06540at 1372.622 kb on - strand, within CSW01_06540at 1372.630 kb on - strand, within CSW01_06540at 1372.759 kb on - strand, within CSW01_06540at 1372.793 kb on - strand, within CSW01_06540at 1372.803 kb on - strand, within CSW01_06540at 1372.805 kb on - strand, within CSW01_06540at 1372.811 kb on - strand, within CSW01_06540at 1372.866 kb on + strand, within CSW01_06540at 1372.866 kb on + strand, within CSW01_06540

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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1,370,727 - CSW01_06530 0.38 -0.1
1,370,785 + CSW01_06530 0.43 -0.7
1,370,821 - CSW01_06530 0.46 -3.2
1,370,868 + CSW01_06530 0.49 +0.2
1,370,896 - CSW01_06530 0.52 -2.5
1,370,896 - CSW01_06530 0.52 -4.0
1,370,896 - CSW01_06530 0.52 +0.8
1,371,057 + CSW01_06530 0.65 +1.1
1,371,057 + CSW01_06530 0.65 -2.4
1,371,065 - CSW01_06530 0.66 -2.3
1,371,069 + CSW01_06530 0.66 +0.7
1,371,069 + CSW01_06530 0.66 +0.9
1,371,077 - CSW01_06530 0.67 -1.6
1,371,162 - CSW01_06530 0.74 +0.3
1,371,256 + CSW01_06530 0.82 +0.7
1,371,297 + CSW01_06530 0.85 -1.7
1,371,305 - CSW01_06530 0.86 -1.0
1,371,305 - CSW01_06530 0.86 -4.0
1,371,323 + CSW01_06530 0.87 -3.2
1,371,664 - +0.1
1,371,825 + CSW01_06535 0.76 -0.6
1,371,826 + CSW01_06535 0.76 -3.0
1,371,851 + +0.6
1,371,927 + -1.0
1,372,021 + CSW01_06540 0.12 +0.8
1,372,084 - CSW01_06540 0.16 -1.2
1,372,249 - CSW01_06540 0.28 -0.6
1,372,289 - CSW01_06540 0.30 -3.5
1,372,343 - CSW01_06540 0.34 +0.8
1,372,462 + CSW01_06540 0.42 +0.2
1,372,497 + CSW01_06540 0.44 -0.5
1,372,497 + CSW01_06540 0.44 +0.2
1,372,504 - CSW01_06540 0.45 +2.2
1,372,505 - CSW01_06540 0.45 +0.6
1,372,505 - CSW01_06540 0.45 +1.4
1,372,505 - CSW01_06540 0.45 -1.5
1,372,505 - CSW01_06540 0.45 +1.2
1,372,507 + CSW01_06540 0.45 -0.8
1,372,540 + CSW01_06540 0.47 +1.0
1,372,612 + CSW01_06540 0.52 +0.1
1,372,622 - CSW01_06540 0.53 +0.7
1,372,630 - CSW01_06540 0.53 +0.1
1,372,759 - CSW01_06540 0.62 -1.5
1,372,793 - CSW01_06540 0.64 -2.4
1,372,803 - CSW01_06540 0.65 -2.1
1,372,805 - CSW01_06540 0.65 +0.8
1,372,811 - CSW01_06540 0.66 +0.4
1,372,866 + CSW01_06540 0.69 -0.5
1,372,866 + CSW01_06540 0.69 +0.1

Or see this region's nucleotide sequence