Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06350

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06345 and CSW01_06350 are separated by 448 nucleotidesCSW01_06350 and CSW01_06355 are separated by 351 nucleotides CSW01_06345: CSW01_06345 - ribonucleoside-diphosphate reductase subunit alpha, at 1,325,126 to 1,327,411 _06345 CSW01_06350: CSW01_06350 - bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase, at 1,327,860 to 1,328,597 _06350 CSW01_06355: CSW01_06355 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 1,328,949 to 1,331,633 _06355 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2at 1328.618 kb on - strandat 1328.649 kb on + strandat 1328.649 kb on + strandat 1328.649 kb on + strandat 1328.657 kb on - strandat 1328.657 kb on - strandat 1328.657 kb on - strandat 1328.657 kb on - strandat 1328.676 kb on + strandat 1328.729 kb on - strandat 1328.764 kb on + strandat 1328.783 kb on - strandat 1328.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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1,328,618 - +0.7
1,328,649 + -2.0
1,328,649 + +0.2
1,328,649 + -1.4
1,328,657 - +1.9
1,328,657 - -0.4
1,328,657 - +1.2
1,328,657 - -0.6
1,328,676 + +1.5
1,328,729 - -2.3
1,328,764 + -1.8
1,328,783 - -0.2
1,328,879 + -0.7

Or see this region's nucleotide sequence