Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05670

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05660 and CSW01_05665 are separated by 81 nucleotidesCSW01_05665 and CSW01_05670 are separated by 226 nucleotidesCSW01_05670 and CSW01_05675 are separated by 209 nucleotidesCSW01_05675 and CSW01_05680 overlap by 4 nucleotides CSW01_05660: CSW01_05660 - dethiobiotin synthase, at 1,183,665 to 1,184,381 _05660 CSW01_05665: CSW01_05665 - hypothetical protein, at 1,184,463 to 1,184,672 _05665 CSW01_05670: CSW01_05670 - protease HtpX, at 1,184,899 to 1,185,762 _05670 CSW01_05675: CSW01_05675 - nuclear transport factor 2 family protein, at 1,185,972 to 1,186,400 _05675 CSW01_05680: CSW01_05680 - short-chain dehydrogenase, at 1,186,397 to 1,187,122 _05680 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1183.912 kb on + strand, within CSW01_05660at 1183.917 kb on + strand, within CSW01_05660at 1183.917 kb on + strand, within CSW01_05660at 1183.920 kb on - strand, within CSW01_05660at 1183.920 kb on - strand, within CSW01_05660at 1183.920 kb on - strand, within CSW01_05660at 1184.086 kb on + strand, within CSW01_05660at 1184.193 kb on - strand, within CSW01_05660at 1184.312 kb on + strandat 1184.327 kb on - strandat 1184.371 kb on - strandat 1184.404 kb on + strandat 1184.451 kb on - strandat 1184.493 kb on + strand, within CSW01_05665at 1184.676 kb on + strandat 1184.676 kb on + strandat 1184.676 kb on + strandat 1184.676 kb on + strandat 1184.684 kb on - strandat 1184.684 kb on - strandat 1184.684 kb on - strandat 1184.684 kb on - strandat 1184.684 kb on - strandat 1184.684 kb on - strandat 1184.714 kb on + strandat 1184.714 kb on + strandat 1184.721 kb on - strandat 1184.722 kb on - strandat 1184.730 kb on + strandat 1184.738 kb on - strandat 1184.768 kb on - strandat 1185.005 kb on + strand, within CSW01_05670at 1185.082 kb on + strand, within CSW01_05670at 1185.169 kb on + strand, within CSW01_05670at 1185.306 kb on + strand, within CSW01_05670at 1185.306 kb on + strand, within CSW01_05670at 1185.306 kb on + strand, within CSW01_05670at 1185.314 kb on - strand, within CSW01_05670at 1185.324 kb on - strand, within CSW01_05670at 1185.370 kb on - strand, within CSW01_05670at 1185.384 kb on + strand, within CSW01_05670at 1185.384 kb on + strand, within CSW01_05670at 1185.454 kb on + strand, within CSW01_05670at 1185.600 kb on + strand, within CSW01_05670at 1185.616 kb on + strand, within CSW01_05670at 1185.693 kb on - strandat 1185.740 kb on + strandat 1185.791 kb on - strandat 1185.795 kb on - strandat 1186.060 kb on - strand, within CSW01_05675at 1186.100 kb on + strand, within CSW01_05675at 1186.143 kb on + strand, within CSW01_05675at 1186.202 kb on + strand, within CSW01_05675at 1186.202 kb on + strand, within CSW01_05675at 1186.241 kb on + strand, within CSW01_05675at 1186.263 kb on + strand, within CSW01_05675at 1186.274 kb on + strand, within CSW01_05675at 1186.408 kb on + strandat 1186.453 kb on + strandat 1186.468 kb on + strandat 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.505 kb on + strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.513 kb on - strand, within CSW01_05680at 1186.597 kb on + strand, within CSW01_05680at 1186.597 kb on + strand, within CSW01_05680at 1186.608 kb on + strand, within CSW01_05680at 1186.678 kb on + strand, within CSW01_05680at 1186.680 kb on + strand, within CSW01_05680at 1186.723 kb on + strand, within CSW01_05680at 1186.742 kb on + strand, within CSW01_05680at 1186.750 kb on - strand, within CSW01_05680

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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1,183,912 + CSW01_05660 0.34 +0.9
1,183,917 + CSW01_05660 0.35 +0.4
1,183,917 + CSW01_05660 0.35 +2.5
1,183,920 - CSW01_05660 0.36 -2.7
1,183,920 - CSW01_05660 0.36 -3.6
1,183,920 - CSW01_05660 0.36 -2.7
1,184,086 + CSW01_05660 0.59 +0.8
1,184,193 - CSW01_05660 0.74 +0.4
1,184,312 + +0.4
1,184,327 - -1.1
1,184,371 - -1.0
1,184,404 + +0.2
1,184,451 - +0.1
1,184,493 + CSW01_05665 0.14 -3.1
1,184,676 + +0.5
1,184,676 + +1.0
1,184,676 + -0.4
1,184,676 + +1.0
1,184,684 - +0.6
1,184,684 - -0.7
1,184,684 - -1.0
1,184,684 - +1.1
1,184,684 - -2.5
1,184,684 - +0.4
1,184,714 + +0.2
1,184,714 + +0.2
1,184,721 - -1.6
1,184,722 - -2.7
1,184,730 + -0.5
1,184,738 - -0.1
1,184,768 - +0.9
1,185,005 + CSW01_05670 0.12 -0.6
1,185,082 + CSW01_05670 0.21 -2.2
1,185,169 + CSW01_05670 0.31 -0.8
1,185,306 + CSW01_05670 0.47 -1.8
1,185,306 + CSW01_05670 0.47 +0.0
1,185,306 + CSW01_05670 0.47 +0.0
1,185,314 - CSW01_05670 0.48 +0.2
1,185,324 - CSW01_05670 0.49 +0.7
1,185,370 - CSW01_05670 0.55 -1.3
1,185,384 + CSW01_05670 0.56 -1.4
1,185,384 + CSW01_05670 0.56 +0.3
1,185,454 + CSW01_05670 0.64 -0.1
1,185,600 + CSW01_05670 0.81 -2.2
1,185,616 + CSW01_05670 0.83 -1.2
1,185,693 - +0.3
1,185,740 + -2.3
1,185,791 - +0.8
1,185,795 - +0.9
1,186,060 - CSW01_05675 0.21 +0.6
1,186,100 + CSW01_05675 0.30 +0.7
1,186,143 + CSW01_05675 0.40 -2.6
1,186,202 + CSW01_05675 0.54 -1.1
1,186,202 + CSW01_05675 0.54 +1.4
1,186,241 + CSW01_05675 0.63 -2.2
1,186,263 + CSW01_05675 0.68 +0.8
1,186,274 + CSW01_05675 0.70 -0.3
1,186,408 + +2.6
1,186,453 + -0.0
1,186,468 + +0.5
1,186,505 + CSW01_05680 0.15 +0.7
1,186,505 + CSW01_05680 0.15 +1.2
1,186,505 + CSW01_05680 0.15 -0.1
1,186,505 + CSW01_05680 0.15 +0.4
1,186,505 + CSW01_05680 0.15 +1.2
1,186,505 + CSW01_05680 0.15 -3.7
1,186,505 + CSW01_05680 0.15 -1.0
1,186,505 + CSW01_05680 0.15 +1.2
1,186,505 + CSW01_05680 0.15 -2.9
1,186,505 + CSW01_05680 0.15 +0.6
1,186,505 + CSW01_05680 0.15 -0.4
1,186,505 + CSW01_05680 0.15 +1.3
1,186,505 + CSW01_05680 0.15 +0.6
1,186,505 + CSW01_05680 0.15 +1.3
1,186,505 + CSW01_05680 0.15 -2.2
1,186,513 - CSW01_05680 0.16 +1.6
1,186,513 - CSW01_05680 0.16 -1.9
1,186,513 - CSW01_05680 0.16 +0.1
1,186,513 - CSW01_05680 0.16 +0.8
1,186,513 - CSW01_05680 0.16 +0.7
1,186,513 - CSW01_05680 0.16 +0.0
1,186,513 - CSW01_05680 0.16 -1.9
1,186,513 - CSW01_05680 0.16 +1.4
1,186,513 - CSW01_05680 0.16 +0.2
1,186,513 - CSW01_05680 0.16 -3.0
1,186,597 + CSW01_05680 0.28 +0.4
1,186,597 + CSW01_05680 0.28 -2.7
1,186,608 + CSW01_05680 0.29 +0.7
1,186,678 + CSW01_05680 0.39 +0.4
1,186,680 + CSW01_05680 0.39 -0.6
1,186,723 + CSW01_05680 0.45 -1.8
1,186,742 + CSW01_05680 0.48 -1.2
1,186,750 - CSW01_05680 0.49 +0.6

Or see this region's nucleotide sequence