Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05510

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05500 and CSW01_05505 are separated by 34 nucleotidesCSW01_05505 and CSW01_05510 overlap by 4 nucleotidesCSW01_05510 and CSW01_05515 are separated by 10 nucleotides CSW01_05500: CSW01_05500 - response regulator, at 1,146,598 to 1,147,740 _05500 CSW01_05505: CSW01_05505 - response regulator, at 1,147,775 to 1,148,140 _05505 CSW01_05510: CSW01_05510 - chemotaxis protein CheC, at 1,148,137 to 1,148,721 _05510 CSW01_05515: CSW01_05515 - two-component sensor histidine kinase, at 1,148,732 to 1,150,051 _05515 Position (kb) 1148 1149Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1147.261 kb on - strand, within CSW01_05500at 1147.269 kb on + strand, within CSW01_05500at 1147.312 kb on + strand, within CSW01_05500at 1147.356 kb on - strand, within CSW01_05500at 1147.433 kb on - strand, within CSW01_05500at 1147.470 kb on + strand, within CSW01_05500at 1147.576 kb on - strand, within CSW01_05500at 1147.688 kb on + strandat 1147.744 kb on + strandat 1147.919 kb on + strand, within CSW01_05505at 1147.919 kb on + strand, within CSW01_05505at 1147.959 kb on + strand, within CSW01_05505at 1148.057 kb on + strand, within CSW01_05505at 1148.057 kb on - strand, within CSW01_05505at 1148.066 kb on + strand, within CSW01_05505at 1148.074 kb on - strand, within CSW01_05505at 1148.139 kb on + strandat 1148.149 kb on - strandat 1148.149 kb on - strandat 1148.149 kb on - strandat 1148.149 kb on - strandat 1148.149 kb on - strandat 1148.200 kb on - strand, within CSW01_05510at 1148.262 kb on + strand, within CSW01_05510at 1148.281 kb on - strand, within CSW01_05510at 1148.301 kb on + strand, within CSW01_05510at 1148.301 kb on + strand, within CSW01_05510at 1148.301 kb on + strand, within CSW01_05510at 1148.304 kb on - strand, within CSW01_05510at 1148.309 kb on - strand, within CSW01_05510at 1148.367 kb on - strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.447 kb on + strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.455 kb on - strand, within CSW01_05510at 1148.482 kb on - strand, within CSW01_05510at 1148.560 kb on - strand, within CSW01_05510at 1148.565 kb on + strand, within CSW01_05510at 1148.642 kb on - strand, within CSW01_05510at 1148.706 kb on - strandat 1148.710 kb on + strandat 1148.710 kb on + strandat 1148.750 kb on - strandat 1148.754 kb on + strandat 1148.786 kb on - strandat 1148.798 kb on - strandat 1149.003 kb on - strand, within CSW01_05515at 1149.014 kb on + strand, within CSW01_05515at 1149.029 kb on + strand, within CSW01_05515at 1149.045 kb on + strand, within CSW01_05515at 1149.102 kb on + strand, within CSW01_05515at 1149.104 kb on - strand, within CSW01_05515at 1149.223 kb on - strand, within CSW01_05515at 1149.319 kb on + strand, within CSW01_05515at 1149.328 kb on - strand, within CSW01_05515at 1149.377 kb on - strand, within CSW01_05515at 1149.399 kb on - strand, within CSW01_05515at 1149.437 kb on - strand, within CSW01_05515at 1149.545 kb on + strand, within CSW01_05515at 1149.565 kb on + strand, within CSW01_05515at 1149.573 kb on - strand, within CSW01_05515at 1149.578 kb on + strand, within CSW01_05515at 1149.634 kb on + strand, within CSW01_05515at 1149.649 kb on + strand, within CSW01_05515at 1149.710 kb on - strand, within CSW01_05515

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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1,147,261 - CSW01_05500 0.58 -0.5
1,147,269 + CSW01_05500 0.59 +0.8
1,147,312 + CSW01_05500 0.62 +0.3
1,147,356 - CSW01_05500 0.66 +0.4
1,147,433 - CSW01_05500 0.73 -2.5
1,147,470 + CSW01_05500 0.76 +0.9
1,147,576 - CSW01_05500 0.86 -1.9
1,147,688 + -1.6
1,147,744 + -0.1
1,147,919 + CSW01_05505 0.39 +0.2
1,147,919 + CSW01_05505 0.39 +2.5
1,147,959 + CSW01_05505 0.50 +1.1
1,148,057 + CSW01_05505 0.77 -1.8
1,148,057 - CSW01_05505 0.77 -1.5
1,148,066 + CSW01_05505 0.80 +0.5
1,148,074 - CSW01_05505 0.82 +0.3
1,148,139 + -3.9
1,148,149 - -0.5
1,148,149 - -0.6
1,148,149 - +1.6
1,148,149 - +0.7
1,148,149 - +1.6
1,148,200 - CSW01_05510 0.11 +1.1
1,148,262 + CSW01_05510 0.21 +0.4
1,148,281 - CSW01_05510 0.25 +1.0
1,148,301 + CSW01_05510 0.28 -2.5
1,148,301 + CSW01_05510 0.28 -0.6
1,148,301 + CSW01_05510 0.28 -1.9
1,148,304 - CSW01_05510 0.29 -3.5
1,148,309 - CSW01_05510 0.29 +0.1
1,148,367 - CSW01_05510 0.39 +1.3
1,148,447 + CSW01_05510 0.53 +0.5
1,148,447 + CSW01_05510 0.53 +2.2
1,148,447 + CSW01_05510 0.53 -1.4
1,148,447 + CSW01_05510 0.53 +0.7
1,148,447 + CSW01_05510 0.53 -3.3
1,148,447 + CSW01_05510 0.53 -3.4
1,148,455 - CSW01_05510 0.54 +0.7
1,148,455 - CSW01_05510 0.54 -1.6
1,148,455 - CSW01_05510 0.54 -0.8
1,148,455 - CSW01_05510 0.54 -0.7
1,148,455 - CSW01_05510 0.54 +0.3
1,148,455 - CSW01_05510 0.54 +0.6
1,148,455 - CSW01_05510 0.54 -0.6
1,148,455 - CSW01_05510 0.54 -0.1
1,148,482 - CSW01_05510 0.59 +0.7
1,148,560 - CSW01_05510 0.72 +1.0
1,148,565 + CSW01_05510 0.73 -0.0
1,148,642 - CSW01_05510 0.86 +0.6
1,148,706 - +0.5
1,148,710 + -1.8
1,148,710 + +0.6
1,148,750 - -2.7
1,148,754 + +0.5
1,148,786 - +0.6
1,148,798 - +1.0
1,149,003 - CSW01_05515 0.21 +0.9
1,149,014 + CSW01_05515 0.21 -1.4
1,149,029 + CSW01_05515 0.23 -0.0
1,149,045 + CSW01_05515 0.24 +3.3
1,149,102 + CSW01_05515 0.28 -1.2
1,149,104 - CSW01_05515 0.28 +1.0
1,149,223 - CSW01_05515 0.37 -1.7
1,149,319 + CSW01_05515 0.44 -1.9
1,149,328 - CSW01_05515 0.45 -0.8
1,149,377 - CSW01_05515 0.49 -3.2
1,149,399 - CSW01_05515 0.51 +0.6
1,149,437 - CSW01_05515 0.53 -0.9
1,149,545 + CSW01_05515 0.62 +0.9
1,149,565 + CSW01_05515 0.63 +1.5
1,149,573 - CSW01_05515 0.64 -0.6
1,149,578 + CSW01_05515 0.64 +0.2
1,149,634 + CSW01_05515 0.68 -1.0
1,149,649 + CSW01_05515 0.69 +0.7
1,149,710 - CSW01_05515 0.74 +0.5

Or see this region's nucleotide sequence