Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04700 and CSW01_04705 are separated by 312 nucleotides CSW01_04705 and CSW01_04710 are separated by 19 nucleotides
CSW01_04700: CSW01_04700 - low molecular weight phosphotyrosine protein phosphatase, at 977,383 to 977,883
_04700
CSW01_04705: CSW01_04705 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 978,196 to 979,314
_04705
CSW01_04710: CSW01_04710 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 979,334 to 980,575
_04710
Position (kb) 978
979
980 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 977.311 kb on + strand at 977.311 kb on + strand at 977.315 kb on + strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.356 kb on + strand at 977.379 kb on + strand at 977.381 kb on + strand at 977.381 kb on + strand at 977.381 kb on - strand at 977.388 kb on + strand at 977.388 kb on + strand at 977.388 kb on + strand at 977.389 kb on - strand at 977.395 kb on + strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.402 kb on - strand at 977.413 kb on - strand at 977.413 kb on - strand at 977.413 kb on - strand at 977.415 kb on + strand at 977.482 kb on + strand, within CSW01_04700 at 977.504 kb on + strand, within CSW01_04700 at 977.504 kb on + strand, within CSW01_04700 at 977.507 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.522 kb on - strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.557 kb on - strand, within CSW01_04700 at 977.558 kb on - strand, within CSW01_04700 at 977.559 kb on - strand, within CSW01_04700 at 977.565 kb on + strand, within CSW01_04700 at 977.573 kb on - strand, within CSW01_04700 at 977.573 kb on - strand, within CSW01_04700 at 977.580 kb on + strand, within CSW01_04700 at 977.580 kb on + strand, within CSW01_04700 at 977.582 kb on - strand, within CSW01_04700 at 977.584 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.588 kb on - strand, within CSW01_04700 at 977.592 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.640 kb on - strand, within CSW01_04700 at 977.642 kb on + strand, within CSW01_04700 at 977.649 kb on + strand, within CSW01_04700 at 977.649 kb on + strand, within CSW01_04700 at 977.650 kb on - strand, within CSW01_04700 at 977.655 kb on + strand, within CSW01_04700 at 977.684 kb on + strand, within CSW01_04700 at 977.697 kb on - strand, within CSW01_04700 at 977.759 kb on - strand, within CSW01_04700 at 977.766 kb on + strand, within CSW01_04700 at 977.795 kb on - strand, within CSW01_04700 at 977.802 kb on + strand, within CSW01_04700 at 977.802 kb on - strand, within CSW01_04700 at 977.810 kb on + strand, within CSW01_04700 at 977.820 kb on + strand, within CSW01_04700 at 977.826 kb on + strand, within CSW01_04700 at 977.828 kb on - strand, within CSW01_04700 at 977.842 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.850 kb on - strand at 977.857 kb on - strand at 977.857 kb on - strand at 977.911 kb on - strand at 978.100 kb on - strand at 978.120 kb on - strand at 978.121 kb on - strand at 978.123 kb on - strand at 978.134 kb on - strand at 978.134 kb on - strand at 978.145 kb on - strand at 978.146 kb on - strand at 978.185 kb on + strand at 978.192 kb on - strand at 978.228 kb on + strand at 978.294 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.345 kb on + strand, within CSW01_04705 at 978.374 kb on + strand, within CSW01_04705 at 978.389 kb on + strand, within CSW01_04705 at 978.411 kb on - strand, within CSW01_04705 at 978.411 kb on - strand, within CSW01_04705 at 978.439 kb on + strand, within CSW01_04705 at 978.439 kb on + strand, within CSW01_04705 at 978.447 kb on - strand, within CSW01_04705 at 978.447 kb on - strand, within CSW01_04705 at 978.456 kb on + strand, within CSW01_04705 at 978.479 kb on + strand, within CSW01_04705 at 978.546 kb on - strand, within CSW01_04705 at 978.573 kb on - strand, within CSW01_04705 at 978.579 kb on + strand, within CSW01_04705 at 978.584 kb on + strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.627 kb on + strand, within CSW01_04705 at 978.627 kb on + strand, within CSW01_04705 at 978.632 kb on + strand, within CSW01_04705 at 978.635 kb on - strand, within CSW01_04705 at 978.635 kb on - strand, within CSW01_04705 at 978.650 kb on - strand, within CSW01_04705 at 978.712 kb on - strand, within CSW01_04705 at 978.725 kb on - strand, within CSW01_04705 at 978.726 kb on + strand, within CSW01_04705 at 978.840 kb on - strand, within CSW01_04705 at 978.885 kb on + strand, within CSW01_04705 at 978.888 kb on - strand, within CSW01_04705 at 978.888 kb on - strand, within CSW01_04705 at 978.888 kb on - strand, within CSW01_04705 at 978.901 kb on - strand, within CSW01_04705 at 978.906 kb on - strand, within CSW01_04705 at 978.972 kb on + strand, within CSW01_04705 at 978.972 kb on + strand, within CSW01_04705 at 979.098 kb on + strand, within CSW01_04705 at 979.098 kb on + strand, within CSW01_04705 at 979.098 kb on + strand, within CSW01_04705 at 979.098 kb on + strand, within CSW01_04705 at 979.106 kb on - strand, within CSW01_04705 at 979.106 kb on - strand, within CSW01_04705 at 979.106 kb on - strand, within CSW01_04705 at 979.208 kb on + strand at 979.208 kb on + strand at 979.208 kb on + strand at 979.209 kb on - strand at 979.209 kb on - strand at 979.209 kb on - strand at 979.216 kb on - strand at 979.216 kb on - strand at 979.224 kb on + strand at 979.224 kb on + strand at 979.272 kb on + strand at 979.272 kb on + strand at 979.273 kb on + strand at 979.281 kb on - strand at 979.318 kb on + strand at 979.323 kb on + strand at 979.371 kb on - strand at 979.391 kb on + strand at 979.399 kb on - strand at 979.422 kb on + strand at 979.422 kb on + strand at 979.430 kb on - strand at 979.471 kb on - strand, within CSW01_04710 at 979.509 kb on + strand, within CSW01_04710 at 979.509 kb on + strand, within CSW01_04710 at 979.509 kb on + strand, within CSW01_04710 at 979.509 kb on + strand, within CSW01_04710 at 979.509 kb on + strand, within CSW01_04710 at 979.517 kb on - strand, within CSW01_04710 at 979.548 kb on - strand, within CSW01_04710 at 979.632 kb on - strand, within CSW01_04710 at 979.748 kb on + strand, within CSW01_04710 at 979.756 kb on - strand, within CSW01_04710 at 979.803 kb on + strand, within CSW01_04710 at 979.803 kb on + strand, within CSW01_04710 at 979.811 kb on - strand, within CSW01_04710 at 979.847 kb on + strand, within CSW01_04710 at 979.873 kb on + strand, within CSW01_04710 at 979.896 kb on + strand, within CSW01_04710 at 979.906 kb on + strand, within CSW01_04710 at 979.906 kb on + strand, within CSW01_04710 at 979.906 kb on + strand, within CSW01_04710 at 979.914 kb on - strand, within CSW01_04710 at 979.914 kb on - strand, within CSW01_04710 at 979.914 kb on - strand, within CSW01_04710 at 979.915 kb on - strand, within CSW01_04710 at 980.020 kb on + strand, within CSW01_04710 at 980.052 kb on + strand, within CSW01_04710 at 980.057 kb on + strand, within CSW01_04710 at 980.084 kb on - strand, within CSW01_04710 at 980.125 kb on + strand, within CSW01_04710 at 980.138 kb on - strand, within CSW01_04710 at 980.180 kb on + strand, within CSW01_04710 at 980.188 kb on - strand, within CSW01_04710 at 980.198 kb on - strand, within CSW01_04710 at 980.219 kb on + strand, within CSW01_04710 at 980.288 kb on + strand, within CSW01_04710 at 980.288 kb on + strand, within CSW01_04710
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 977,311 + -0.9 977,311 + -2.8 977,315 + +1.1 977,319 - +0.7 977,319 - -1.5 977,319 - +1.3 977,319 - -0.7 977,356 + +0.3 977,379 + +0.0 977,381 + +2.9 977,381 + +0.9 977,381 - -3.2 977,388 + -0.1 977,388 + -1.6 977,388 + +0.0 977,389 - -3.2 977,395 + +0.2 977,396 - +0.2 977,396 - -2.5 977,396 - -0.4 977,396 - -2.8 977,402 - -1.4 977,413 - -0.3 977,413 - +0.8 977,413 - +0.5 977,415 + +1.0 977,482 + CSW01_04700 0.20 +1.3 977,504 + CSW01_04700 0.24 -0.7 977,504 + CSW01_04700 0.24 +0.4 977,507 - CSW01_04700 0.25 +0.9 977,512 - CSW01_04700 0.26 +1.0 977,512 - CSW01_04700 0.26 -2.1 977,512 - CSW01_04700 0.26 +0.0 977,512 - CSW01_04700 0.26 +1.3 977,512 - CSW01_04700 0.26 -0.4 977,522 - CSW01_04700 0.28 -0.9 977,551 + CSW01_04700 0.34 +1.7 977,551 + CSW01_04700 0.34 -3.5 977,551 + CSW01_04700 0.34 +0.6 977,557 - CSW01_04700 0.35 -0.4 977,558 - CSW01_04700 0.35 -2.1 977,559 - CSW01_04700 0.35 +0.6 977,565 + CSW01_04700 0.36 -0.7 977,573 - CSW01_04700 0.38 -2.4 977,573 - CSW01_04700 0.38 -3.8 977,580 + CSW01_04700 0.39 +0.3 977,580 + CSW01_04700 0.39 +0.6 977,582 - CSW01_04700 0.40 -1.3 977,584 + CSW01_04700 0.40 -0.5 977,586 + CSW01_04700 0.41 -0.9 977,586 + CSW01_04700 0.41 -2.8 977,586 + CSW01_04700 0.41 +0.7 977,586 + CSW01_04700 0.41 -0.7 977,586 + CSW01_04700 0.41 +1.7 977,586 + CSW01_04700 0.41 +0.2 977,586 + CSW01_04700 0.41 -3.4 977,588 - CSW01_04700 0.41 -0.5 977,592 - CSW01_04700 0.42 -0.7 977,594 - CSW01_04700 0.42 -0.6 977,594 - CSW01_04700 0.42 -2.4 977,594 - CSW01_04700 0.42 +0.6 977,594 - CSW01_04700 0.42 -1.5 977,594 - CSW01_04700 0.42 -0.6 977,594 - CSW01_04700 0.42 -0.4 977,594 - CSW01_04700 0.42 -0.6 977,640 - CSW01_04700 0.51 -1.7 977,642 + CSW01_04700 0.52 -0.7 977,649 + CSW01_04700 0.53 -1.9 977,649 + CSW01_04700 0.53 -0.7 977,650 - CSW01_04700 0.53 +0.6 977,655 + CSW01_04700 0.54 +0.3 977,684 + CSW01_04700 0.60 -0.7 977,697 - CSW01_04700 0.63 +0.4 977,759 - CSW01_04700 0.75 +0.1 977,766 + CSW01_04700 0.76 +0.4 977,795 - CSW01_04700 0.82 +1.3 977,802 + CSW01_04700 0.84 -0.3 977,802 - CSW01_04700 0.84 -1.1 977,810 + CSW01_04700 0.85 -3.7 977,820 + CSW01_04700 0.87 -2.6 977,826 + CSW01_04700 0.88 +1.3 977,828 - CSW01_04700 0.89 +0.9 977,842 + +0.6 977,849 + +1.4 977,849 + +1.3 977,849 + -0.1 977,849 + +0.1 977,850 - -2.0 977,857 - -1.1 977,857 - -3.7 977,911 - -2.2 978,100 - -1.2 978,120 - -1.2 978,121 - -1.3 978,123 - +0.1 978,134 - +1.6 978,134 - +1.4 978,145 - +0.0 978,146 - -0.1 978,185 + +0.4 978,192 - -0.3 978,228 + +1.2 978,294 + +0.5 978,307 + +0.9 978,307 + -0.8 978,307 + +0.0 978,307 + -3.7 978,307 + +0.3 978,315 - CSW01_04705 0.11 -2.3 978,315 - CSW01_04705 0.11 -0.0 978,315 - CSW01_04705 0.11 +1.1 978,315 - CSW01_04705 0.11 -0.6 978,345 + CSW01_04705 0.13 +0.2 978,374 + CSW01_04705 0.16 -4.5 978,389 + CSW01_04705 0.17 +0.5 978,411 - CSW01_04705 0.19 +0.7 978,411 - CSW01_04705 0.19 -1.1 978,439 + CSW01_04705 0.22 +2.9 978,439 + CSW01_04705 0.22 +1.3 978,447 - CSW01_04705 0.22 +0.7 978,447 - CSW01_04705 0.22 -2.5 978,456 + CSW01_04705 0.23 -0.7 978,479 + CSW01_04705 0.25 +2.9 978,546 - CSW01_04705 0.31 -0.3 978,573 - CSW01_04705 0.34 -2.2 978,579 + CSW01_04705 0.34 -1.4 978,584 + CSW01_04705 0.35 +0.7 978,592 - CSW01_04705 0.35 -2.0 978,592 - CSW01_04705 0.35 +0.1 978,592 - CSW01_04705 0.35 -0.8 978,627 + CSW01_04705 0.39 +0.4 978,627 + CSW01_04705 0.39 +1.2 978,632 + CSW01_04705 0.39 +2.1 978,635 - CSW01_04705 0.39 -0.9 978,635 - CSW01_04705 0.39 +1.0 978,650 - CSW01_04705 0.41 +1.4 978,712 - CSW01_04705 0.46 +0.9 978,725 - CSW01_04705 0.47 -0.4 978,726 + CSW01_04705 0.47 +0.3 978,840 - CSW01_04705 0.58 -2.5 978,885 + CSW01_04705 0.62 +0.7 978,888 - CSW01_04705 0.62 -1.0 978,888 - CSW01_04705 0.62 +0.8 978,888 - CSW01_04705 0.62 +0.8 978,901 - CSW01_04705 0.63 -2.3 978,906 - CSW01_04705 0.63 -0.6 978,972 + CSW01_04705 0.69 +0.5 978,972 + CSW01_04705 0.69 +0.5 979,098 + CSW01_04705 0.81 -1.3 979,098 + CSW01_04705 0.81 +1.0 979,098 + CSW01_04705 0.81 -0.4 979,098 + CSW01_04705 0.81 +0.9 979,106 - CSW01_04705 0.81 +0.4 979,106 - CSW01_04705 0.81 -0.8 979,106 - CSW01_04705 0.81 -0.3 979,208 + -0.3 979,208 + +0.3 979,208 + +0.5 979,209 - +0.3 979,209 - -0.8 979,209 - -0.0 979,216 - -3.0 979,216 - -2.3 979,224 + +1.3 979,224 + -1.2 979,272 + -0.7 979,272 + -3.8 979,273 + -3.0 979,281 - -1.0 979,318 + +0.4 979,323 + -3.2 979,371 - -1.4 979,391 + -0.3 979,399 - -0.3 979,422 + -1.0 979,422 + +0.7 979,430 - +0.3 979,471 - CSW01_04710 0.11 +0.8 979,509 + CSW01_04710 0.14 -0.5 979,509 + CSW01_04710 0.14 -2.5 979,509 + CSW01_04710 0.14 +0.1 979,509 + CSW01_04710 0.14 -3.2 979,509 + CSW01_04710 0.14 +0.2 979,517 - CSW01_04710 0.15 -1.8 979,548 - CSW01_04710 0.17 +1.0 979,632 - CSW01_04710 0.24 +0.1 979,748 + CSW01_04710 0.33 -0.3 979,756 - CSW01_04710 0.34 -3.6 979,803 + CSW01_04710 0.38 +0.5 979,803 + CSW01_04710 0.38 -3.0 979,811 - CSW01_04710 0.38 -1.2 979,847 + CSW01_04710 0.41 -0.7 979,873 + CSW01_04710 0.43 +0.2 979,896 + CSW01_04710 0.45 -3.5 979,906 + CSW01_04710 0.46 -2.8 979,906 + CSW01_04710 0.46 +0.8 979,906 + CSW01_04710 0.46 -0.4 979,914 - CSW01_04710 0.47 -0.2 979,914 - CSW01_04710 0.47 -2.6 979,914 - CSW01_04710 0.47 -1.5 979,915 - CSW01_04710 0.47 +1.0 980,020 + CSW01_04710 0.55 -0.7 980,052 + CSW01_04710 0.58 -1.4 980,057 + CSW01_04710 0.58 -2.4 980,084 - CSW01_04710 0.60 -4.3 980,125 + CSW01_04710 0.64 -0.5 980,138 - CSW01_04710 0.65 +0.1 980,180 + CSW01_04710 0.68 -1.4 980,188 - CSW01_04710 0.69 +0.4 980,198 - CSW01_04710 0.70 -1.9 980,219 + CSW01_04710 0.71 +0.4 980,288 + CSW01_04710 0.77 -2.0 980,288 + CSW01_04710 0.77 -0.5
Or see this region's nucleotide sequence