Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04065

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04060 and CSW01_04065 are separated by 366 nucleotidesCSW01_04065 and CSW01_04070 are separated by 100 nucleotides CSW01_04060: CSW01_04060 - alanine:cation symporter family protein, at 839,186 to 840,736 _04060 CSW01_04065: CSW01_04065 - D-amino acid dehydrogenase small subunit, at 841,103 to 842,368 _04065 CSW01_04070: CSW01_04070 - LysR family transcriptional regulator, at 842,469 to 843,401 _04070 Position (kb) 841 842 843Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 840.186 kb on - strand, within CSW01_04060at 840.206 kb on + strand, within CSW01_04060at 840.218 kb on + strand, within CSW01_04060at 840.275 kb on - strand, within CSW01_04060at 840.368 kb on + strand, within CSW01_04060at 840.413 kb on - strand, within CSW01_04060at 840.538 kb on - strand, within CSW01_04060at 840.563 kb on + strand, within CSW01_04060at 840.598 kb on - strandat 840.656 kb on + strandat 840.659 kb on - strandat 840.686 kb on - strandat 840.704 kb on - strandat 840.736 kb on - strandat 840.786 kb on + strandat 840.896 kb on + strandat 840.904 kb on - strandat 841.166 kb on + strandat 841.209 kb on + strandat 841.266 kb on - strand, within CSW01_04065at 841.274 kb on - strand, within CSW01_04065at 841.467 kb on + strand, within CSW01_04065at 841.470 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.551 kb on + strand, within CSW01_04065at 841.640 kb on + strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.703 kb on - strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.800 kb on - strand, within CSW01_04065at 841.800 kb on - strand, within CSW01_04065at 841.819 kb on + strand, within CSW01_04065at 841.827 kb on - strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.853 kb on - strand, within CSW01_04065at 842.013 kb on - strand, within CSW01_04065at 842.013 kb on - strand, within CSW01_04065at 842.108 kb on + strand, within CSW01_04065at 842.111 kb on - strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.218 kb on - strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.298 kb on - strandat 842.343 kb on - strandat 842.517 kb on + strandat 842.517 kb on + strandat 842.641 kb on + strand, within CSW01_04070at 842.661 kb on + strand, within CSW01_04070at 842.700 kb on - strand, within CSW01_04070at 842.715 kb on + strand, within CSW01_04070at 842.730 kb on - strand, within CSW01_04070at 842.730 kb on - strand, within CSW01_04070at 842.739 kb on - strand, within CSW01_04070at 842.846 kb on - strand, within CSW01_04070at 842.864 kb on + strand, within CSW01_04070at 842.872 kb on - strand, within CSW01_04070at 842.923 kb on - strand, within CSW01_04070at 842.989 kb on - strand, within CSW01_04070at 842.991 kb on + strand, within CSW01_04070at 843.019 kb on - strand, within CSW01_04070at 843.030 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.066 kb on - strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.106 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.120 kb on + strand, within CSW01_04070at 843.152 kb on - strand, within CSW01_04070at 843.165 kb on + strand, within CSW01_04070at 843.178 kb on + strand, within CSW01_04070at 843.236 kb on + strand, within CSW01_04070

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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840,186 - CSW01_04060 0.64 -1.2
840,206 + CSW01_04060 0.66 +0.3
840,218 + CSW01_04060 0.67 +1.8
840,275 - CSW01_04060 0.70 +0.6
840,368 + CSW01_04060 0.76 -0.3
840,413 - CSW01_04060 0.79 -3.2
840,538 - CSW01_04060 0.87 -0.7
840,563 + CSW01_04060 0.89 -2.0
840,598 - -2.4
840,656 + +0.7
840,659 - -0.7
840,686 - -2.9
840,704 - -0.8
840,736 - +1.7
840,786 + -0.1
840,896 + -0.9
840,904 - -0.4
841,166 + -1.7
841,209 + -0.4
841,266 - CSW01_04065 0.13 -1.9
841,274 - CSW01_04065 0.14 +0.1
841,467 + CSW01_04065 0.29 +0.6
841,470 - CSW01_04065 0.29 -0.5
841,536 - CSW01_04065 0.34 -3.2
841,536 - CSW01_04065 0.34 -0.4
841,551 + CSW01_04065 0.35 -0.2
841,640 + CSW01_04065 0.42 +0.1
841,648 - CSW01_04065 0.43 -1.2
841,648 - CSW01_04065 0.43 -0.4
841,703 - CSW01_04065 0.47 -1.7
841,792 + CSW01_04065 0.54 -2.2
841,792 + CSW01_04065 0.54 +2.1
841,792 + CSW01_04065 0.54 +2.1
841,800 - CSW01_04065 0.55 +0.7
841,800 - CSW01_04065 0.55 +0.4
841,819 + CSW01_04065 0.57 -0.4
841,827 - CSW01_04065 0.57 -0.1
841,845 + CSW01_04065 0.59 +0.6
841,845 + CSW01_04065 0.59 -0.7
841,845 + CSW01_04065 0.59 -0.8
841,853 - CSW01_04065 0.59 -2.7
842,013 - CSW01_04065 0.72 +1.6
842,013 - CSW01_04065 0.72 +1.0
842,108 + CSW01_04065 0.79 -0.4
842,111 - CSW01_04065 0.80 +1.2
842,199 + CSW01_04065 0.87 +0.6
842,199 + CSW01_04065 0.87 +1.1
842,199 + CSW01_04065 0.87 +0.9
842,207 - CSW01_04065 0.87 +1.4
842,207 - CSW01_04065 0.87 +1.5
842,207 - CSW01_04065 0.87 +0.4
842,207 - CSW01_04065 0.87 +0.7
842,218 - CSW01_04065 0.88 +0.5
842,225 + CSW01_04065 0.89 -0.4
842,225 + CSW01_04065 0.89 +1.4
842,225 + CSW01_04065 0.89 +1.1
842,298 - -1.3
842,343 - -1.7
842,517 + +1.7
842,517 + -2.2
842,641 + CSW01_04070 0.18 -1.5
842,661 + CSW01_04070 0.21 +0.7
842,700 - CSW01_04070 0.25 -2.2
842,715 + CSW01_04070 0.26 +0.8
842,730 - CSW01_04070 0.28 -1.5
842,730 - CSW01_04070 0.28 -0.1
842,739 - CSW01_04070 0.29 +0.5
842,846 - CSW01_04070 0.40 -2.0
842,864 + CSW01_04070 0.42 +2.6
842,872 - CSW01_04070 0.43 +2.7
842,923 - CSW01_04070 0.49 -0.3
842,989 - CSW01_04070 0.56 -2.1
842,991 + CSW01_04070 0.56 -2.5
843,019 - CSW01_04070 0.59 +0.9
843,030 + CSW01_04070 0.60 +0.1
843,058 + CSW01_04070 0.63 +0.8
843,058 + CSW01_04070 0.63 -2.0
843,058 + CSW01_04070 0.63 -1.2
843,066 - CSW01_04070 0.64 +1.4
843,101 + CSW01_04070 0.68 +0.6
843,101 + CSW01_04070 0.68 +1.8
843,106 - CSW01_04070 0.68 -3.9
843,109 - CSW01_04070 0.69 -2.2
843,109 - CSW01_04070 0.69 +1.9
843,120 + CSW01_04070 0.70 -2.3
843,152 - CSW01_04070 0.73 -2.7
843,165 + CSW01_04070 0.75 -1.2
843,178 + CSW01_04070 0.76 -3.3
843,236 + CSW01_04070 0.82 +0.4

Or see this region's nucleotide sequence