Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03990

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03985 and CSW01_03990 are separated by 235 nucleotidesCSW01_03990 and CSW01_03995 are separated by 190 nucleotides CSW01_03985: CSW01_03985 - GMP synthase (glutamine-hydrolyzing), at 820,335 to 821,888 _03985 CSW01_03990: CSW01_03990 - chitinase, at 822,124 to 823,848 _03990 CSW01_03995: CSW01_03995 - hypothetical protein, at 824,039 to 824,632 _03995 Position (kb) 822 823 824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 821.323 kb on + strand, within CSW01_03985at 821.323 kb on + strand, within CSW01_03985at 821.331 kb on - strand, within CSW01_03985at 821.426 kb on + strand, within CSW01_03985at 821.447 kb on + strand, within CSW01_03985at 821.473 kb on + strand, within CSW01_03985at 821.618 kb on - strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.718 kb on + strand, within CSW01_03985at 821.733 kb on + strandat 821.741 kb on - strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.946 kb on - strandat 822.178 kb on + strandat 822.186 kb on - strandat 822.275 kb on + strandat 822.293 kb on - strandat 822.460 kb on + strand, within CSW01_03990at 822.467 kb on + strand, within CSW01_03990at 822.531 kb on + strand, within CSW01_03990at 822.539 kb on - strand, within CSW01_03990at 822.675 kb on - strand, within CSW01_03990at 822.689 kb on + strand, within CSW01_03990at 822.689 kb on + strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.712 kb on + strand, within CSW01_03990at 822.758 kb on + strand, within CSW01_03990at 822.771 kb on + strand, within CSW01_03990at 822.774 kb on - strand, within CSW01_03990at 822.796 kb on - strand, within CSW01_03990at 822.809 kb on + strand, within CSW01_03990at 822.835 kb on + strand, within CSW01_03990at 822.846 kb on - strand, within CSW01_03990at 822.854 kb on + strand, within CSW01_03990at 822.903 kb on - strand, within CSW01_03990at 822.903 kb on - strand, within CSW01_03990at 822.932 kb on + strand, within CSW01_03990at 823.044 kb on + strand, within CSW01_03990at 823.052 kb on + strand, within CSW01_03990at 823.081 kb on + strand, within CSW01_03990at 823.169 kb on - strand, within CSW01_03990at 823.185 kb on + strand, within CSW01_03990at 823.196 kb on + strand, within CSW01_03990at 823.196 kb on + strand, within CSW01_03990at 823.203 kb on + strand, within CSW01_03990at 823.203 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.224 kb on + strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.232 kb on - strand, within CSW01_03990at 823.254 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.305 kb on + strand, within CSW01_03990at 823.329 kb on + strand, within CSW01_03990at 823.342 kb on + strand, within CSW01_03990at 823.370 kb on + strand, within CSW01_03990at 823.385 kb on + strand, within CSW01_03990at 823.473 kb on + strand, within CSW01_03990at 823.488 kb on - strand, within CSW01_03990at 823.528 kb on + strand, within CSW01_03990at 823.555 kb on - strand, within CSW01_03990at 823.593 kb on + strand, within CSW01_03990at 823.633 kb on - strand, within CSW01_03990at 823.637 kb on + strand, within CSW01_03990at 823.693 kb on - strandat 823.731 kb on + strandat 823.777 kb on + strandat 823.777 kb on + strandat 823.787 kb on + strandat 823.790 kb on - strandat 823.795 kb on - strandat 823.795 kb on - strandat 824.028 kb on + strandat 824.033 kb on + strandat 824.041 kb on - strandat 824.053 kb on + strandat 824.058 kb on + strandat 824.104 kb on + strand, within CSW01_03995at 824.105 kb on - strand, within CSW01_03995at 824.112 kb on - strand, within CSW01_03995at 824.260 kb on - strand, within CSW01_03995at 824.265 kb on - strand, within CSW01_03995at 824.338 kb on - strand, within CSW01_03995at 824.382 kb on - strand, within CSW01_03995at 824.394 kb on - strand, within CSW01_03995at 824.566 kb on - strand, within CSW01_03995at 824.620 kb on - strandat 824.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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821,323 + CSW01_03985 0.64 -1.6
821,323 + CSW01_03985 0.64 +1.3
821,331 - CSW01_03985 0.64 +1.3
821,426 + CSW01_03985 0.70 -0.0
821,447 + CSW01_03985 0.72 -2.6
821,473 + CSW01_03985 0.73 +1.7
821,618 - CSW01_03985 0.83 +1.6
821,660 + CSW01_03985 0.85 -1.6
821,660 + CSW01_03985 0.85 +1.9
821,660 + CSW01_03985 0.85 -2.0
821,718 + CSW01_03985 0.89 -1.8
821,733 + +0.6
821,741 - +0.2
821,841 + -3.3
821,841 + +0.7
821,841 + +0.4
821,841 + -1.9
821,841 + +0.9
821,841 + +0.4
821,841 + -0.1
821,849 - +0.8
821,849 - -0.2
821,849 - -2.2
821,849 - -2.5
821,849 - +1.6
821,849 - -0.9
821,946 - -0.4
822,178 + +0.1
822,186 - -0.5
822,275 + -1.2
822,293 - -0.1
822,460 + CSW01_03990 0.19 +0.3
822,467 + CSW01_03990 0.20 +0.5
822,531 + CSW01_03990 0.24 -0.3
822,539 - CSW01_03990 0.24 -1.0
822,675 - CSW01_03990 0.32 -3.2
822,689 + CSW01_03990 0.33 +0.2
822,689 + CSW01_03990 0.33 +1.1
822,697 - CSW01_03990 0.33 -1.1
822,697 - CSW01_03990 0.33 +0.6
822,697 - CSW01_03990 0.33 +1.0
822,712 + CSW01_03990 0.34 +0.5
822,758 + CSW01_03990 0.37 -1.4
822,771 + CSW01_03990 0.38 +0.1
822,774 - CSW01_03990 0.38 -0.1
822,796 - CSW01_03990 0.39 +0.3
822,809 + CSW01_03990 0.40 +0.9
822,835 + CSW01_03990 0.41 +0.0
822,846 - CSW01_03990 0.42 +0.4
822,854 + CSW01_03990 0.42 -0.6
822,903 - CSW01_03990 0.45 +0.5
822,903 - CSW01_03990 0.45 -1.9
822,932 + CSW01_03990 0.47 +0.4
823,044 + CSW01_03990 0.53 +1.7
823,052 + CSW01_03990 0.54 +0.6
823,081 + CSW01_03990 0.55 -1.1
823,169 - CSW01_03990 0.61 +0.6
823,185 + CSW01_03990 0.62 -0.3
823,196 + CSW01_03990 0.62 +0.6
823,196 + CSW01_03990 0.62 +0.3
823,203 + CSW01_03990 0.63 -1.5
823,203 + CSW01_03990 0.63 -1.0
823,224 + CSW01_03990 0.64 -1.8
823,224 + CSW01_03990 0.64 +0.3
823,224 + CSW01_03990 0.64 +1.1
823,232 - CSW01_03990 0.64 +2.3
823,232 - CSW01_03990 0.64 -0.8
823,232 - CSW01_03990 0.64 +0.3
823,232 - CSW01_03990 0.64 -2.1
823,254 + CSW01_03990 0.66 +1.3
823,305 + CSW01_03990 0.68 +2.0
823,305 + CSW01_03990 0.68 +0.4
823,305 + CSW01_03990 0.68 -1.3
823,329 + CSW01_03990 0.70 +1.2
823,342 + CSW01_03990 0.71 -2.2
823,370 + CSW01_03990 0.72 +1.5
823,385 + CSW01_03990 0.73 -0.5
823,473 + CSW01_03990 0.78 -4.0
823,488 - CSW01_03990 0.79 +1.1
823,528 + CSW01_03990 0.81 +0.5
823,555 - CSW01_03990 0.83 -2.3
823,593 + CSW01_03990 0.85 -2.2
823,633 - CSW01_03990 0.87 +0.2
823,637 + CSW01_03990 0.88 -0.2
823,693 - -0.1
823,731 + +0.7
823,777 + +1.7
823,777 + -2.3
823,787 + +0.7
823,790 - -0.8
823,795 - +0.7
823,795 - +0.4
824,028 + -2.3
824,033 + -0.6
824,041 - +1.1
824,053 + +0.6
824,058 + -2.1
824,104 + CSW01_03995 0.11 -0.1
824,105 - CSW01_03995 0.11 +0.9
824,112 - CSW01_03995 0.12 +1.2
824,260 - CSW01_03995 0.37 -1.4
824,265 - CSW01_03995 0.38 -1.0
824,338 - CSW01_03995 0.50 +0.7
824,382 - CSW01_03995 0.58 -3.3
824,394 - CSW01_03995 0.60 -2.8
824,566 - CSW01_03995 0.89 -0.1
824,620 - +0.6
824,659 - -1.6

Or see this region's nucleotide sequence