Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03280

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03275 and CSW01_03280 are separated by 207 nucleotidesCSW01_03280 and CSW01_03285 are separated by 72 nucleotides CSW01_03275: CSW01_03275 - hybrid sensor histidine kinase/response regulator, at 656,978 to 660,367 _03275 CSW01_03280: CSW01_03280 - 16S rRNA methyltransferase, at 660,575 to 661,597 _03280 CSW01_03285: CSW01_03285 - AI-2E family transporter, at 661,670 to 662,755 _03285 Position (kb) 660 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 659.584 kb on + strand, within CSW01_03275at 659.617 kb on - strand, within CSW01_03275at 659.702 kb on + strand, within CSW01_03275at 659.730 kb on + strand, within CSW01_03275at 659.738 kb on - strand, within CSW01_03275at 659.763 kb on - strand, within CSW01_03275at 659.772 kb on + strand, within CSW01_03275at 659.777 kb on + strand, within CSW01_03275at 659.865 kb on + strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.932 kb on - strand, within CSW01_03275at 659.949 kb on - strand, within CSW01_03275at 659.981 kb on + strand, within CSW01_03275at 660.060 kb on - strandat 660.074 kb on - strandat 660.119 kb on + strandat 660.119 kb on + strandat 660.163 kb on - strandat 660.222 kb on + strandat 660.230 kb on - strandat 660.238 kb on + strandat 660.357 kb on + strandat 660.712 kb on + strand, within CSW01_03280at 660.790 kb on + strand, within CSW01_03280at 660.842 kb on - strand, within CSW01_03280at 660.897 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 661.011 kb on + strand, within CSW01_03280at 661.012 kb on - strand, within CSW01_03280at 661.249 kb on - strand, within CSW01_03280at 661.254 kb on - strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.358 kb on + strand, within CSW01_03280at 661.388 kb on - strand, within CSW01_03280at 661.403 kb on - strand, within CSW01_03280at 661.430 kb on - strand, within CSW01_03280at 661.448 kb on - strand, within CSW01_03280at 661.579 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.587 kb on - strandat 661.587 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.616 kb on - strandat 661.727 kb on - strandat 661.786 kb on + strand, within CSW01_03285at 661.802 kb on - strand, within CSW01_03285at 661.831 kb on + strand, within CSW01_03285at 661.832 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.841 kb on + strand, within CSW01_03285at 661.844 kb on - strand, within CSW01_03285at 661.849 kb on - strand, within CSW01_03285at 661.883 kb on - strand, within CSW01_03285at 661.961 kb on + strand, within CSW01_03285at 661.985 kb on - strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.066 kb on + strand, within CSW01_03285at 662.067 kb on + strand, within CSW01_03285at 662.120 kb on - strand, within CSW01_03285at 662.168 kb on + strand, within CSW01_03285at 662.171 kb on - strand, within CSW01_03285at 662.176 kb on - strand, within CSW01_03285at 662.217 kb on + strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.355 kb on + strand, within CSW01_03285at 662.363 kb on - strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.418 kb on - strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.454 kb on - strand, within CSW01_03285at 662.477 kb on + strand, within CSW01_03285at 662.484 kb on - strand, within CSW01_03285

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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659,584 + CSW01_03275 0.77 +0.9
659,617 - CSW01_03275 0.78 -0.8
659,702 + CSW01_03275 0.80 +0.9
659,730 + CSW01_03275 0.81 -3.5
659,738 - CSW01_03275 0.81 -1.2
659,763 - CSW01_03275 0.82 -4.4
659,772 + CSW01_03275 0.82 +0.4
659,777 + CSW01_03275 0.83 +0.6
659,865 + CSW01_03275 0.85 -0.3
659,916 - CSW01_03275 0.87 -1.4
659,916 - CSW01_03275 0.87 +0.8
659,932 - CSW01_03275 0.87 +0.1
659,949 - CSW01_03275 0.88 -2.4
659,981 + CSW01_03275 0.89 +0.4
660,060 - +2.0
660,074 - -2.2
660,119 + -3.9
660,119 + -0.0
660,163 - +1.4
660,222 + -0.4
660,230 - +1.5
660,238 + +2.2
660,357 + +1.7
660,712 + CSW01_03280 0.13 +0.2
660,790 + CSW01_03280 0.21 -1.7
660,842 - CSW01_03280 0.26 +0.8
660,897 + CSW01_03280 0.31 +0.1
660,953 + CSW01_03280 0.37 +0.2
660,953 + CSW01_03280 0.37 +0.6
660,961 - CSW01_03280 0.38 -0.3
660,961 - CSW01_03280 0.38 -1.2
660,961 - CSW01_03280 0.38 +0.0
660,961 - CSW01_03280 0.38 +0.4
661,011 + CSW01_03280 0.43 -3.9
661,012 - CSW01_03280 0.43 -0.7
661,249 - CSW01_03280 0.66 -1.3
661,254 - CSW01_03280 0.66 -0.7
661,287 + CSW01_03280 0.70 +0.6
661,287 + CSW01_03280 0.70 +0.9
661,358 + CSW01_03280 0.77 -0.3
661,388 - CSW01_03280 0.79 -1.2
661,403 - CSW01_03280 0.81 -2.4
661,430 - CSW01_03280 0.84 -0.8
661,448 - CSW01_03280 0.85 +0.8
661,579 + +0.2
661,584 + -0.3
661,584 + +0.0
661,584 + -2.7
661,584 + -0.3
661,584 + -1.6
661,584 + +1.3
661,587 - -0.2
661,587 - +0.1
661,592 - +2.5
661,592 - +2.0
661,592 - +1.0
661,592 - +0.6
661,616 - +0.3
661,727 - +0.0
661,786 + CSW01_03285 0.11 +1.9
661,802 - CSW01_03285 0.12 -3.9
661,831 + CSW01_03285 0.15 -2.2
661,832 - CSW01_03285 0.15 -0.6
661,839 - CSW01_03285 0.16 +0.3
661,839 - CSW01_03285 0.16 -3.4
661,841 + CSW01_03285 0.16 +2.3
661,844 - CSW01_03285 0.16 +1.0
661,849 - CSW01_03285 0.16 +0.8
661,883 - CSW01_03285 0.20 -0.7
661,961 + CSW01_03285 0.27 +1.2
661,985 - CSW01_03285 0.29 -0.4
662,019 + CSW01_03285 0.32 +0.6
662,019 + CSW01_03285 0.32 +0.5
662,066 + CSW01_03285 0.36 -1.2
662,067 + CSW01_03285 0.37 -2.1
662,120 - CSW01_03285 0.41 -3.3
662,168 + CSW01_03285 0.46 +1.6
662,171 - CSW01_03285 0.46 -1.6
662,176 - CSW01_03285 0.47 +0.0
662,217 + CSW01_03285 0.50 -2.7
662,225 - CSW01_03285 0.51 +0.8
662,225 - CSW01_03285 0.51 -0.7
662,355 + CSW01_03285 0.63 -2.3
662,363 - CSW01_03285 0.64 +1.3
662,393 + CSW01_03285 0.67 +0.6
662,393 + CSW01_03285 0.67 -1.9
662,418 - CSW01_03285 0.69 -1.7
662,420 + CSW01_03285 0.69 +0.5
662,420 + CSW01_03285 0.69 -2.5
662,454 - CSW01_03285 0.72 -0.0
662,477 + CSW01_03285 0.74 +0.6
662,484 - CSW01_03285 0.75 +0.1

Or see this region's nucleotide sequence