Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03245

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03240 and CSW01_03245 are separated by 56 nucleotidesCSW01_03245 and CSW01_03250 are separated by 42 nucleotides CSW01_03240: CSW01_03240 - chitobiase, at 648,408 to 650,132 _03240 CSW01_03245: CSW01_03245 - ABC transporter ATP-binding protein, at 650,189 to 651,184 _03245 CSW01_03250: CSW01_03250 - ABC transporter ATP-binding protein, at 651,227 to 652,210 _03250 Position (kb) 650 651 652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 649.203 kb on + strand, within CSW01_03240at 649.203 kb on + strand, within CSW01_03240at 649.211 kb on - strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.226 kb on - strand, within CSW01_03240at 649.246 kb on + strand, within CSW01_03240at 649.263 kb on + strand, within CSW01_03240at 649.334 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.444 kb on - strand, within CSW01_03240at 649.563 kb on - strand, within CSW01_03240at 649.608 kb on + strand, within CSW01_03240at 649.614 kb on + strand, within CSW01_03240at 649.635 kb on + strand, within CSW01_03240at 649.637 kb on + strand, within CSW01_03240at 649.711 kb on + strand, within CSW01_03240at 649.724 kb on - strand, within CSW01_03240at 649.733 kb on + strand, within CSW01_03240at 649.741 kb on - strand, within CSW01_03240at 649.758 kb on - strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.790 kb on + strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.798 kb on - strand, within CSW01_03240at 649.803 kb on - strand, within CSW01_03240at 649.803 kb on - strand, within CSW01_03240at 649.808 kb on + strand, within CSW01_03240at 649.808 kb on + strand, within CSW01_03240at 649.816 kb on - strand, within CSW01_03240at 650.070 kb on + strandat 650.078 kb on - strandat 650.078 kb on - strandat 650.078 kb on - strandat 650.084 kb on + strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.092 kb on - strandat 650.165 kb on + strandat 650.172 kb on + strandat 650.173 kb on - strandat 650.401 kb on - strand, within CSW01_03245at 650.403 kb on - strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.406 kb on + strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.414 kb on - strand, within CSW01_03245at 650.416 kb on + strand, within CSW01_03245at 650.442 kb on + strand, within CSW01_03245at 650.528 kb on + strand, within CSW01_03245at 650.534 kb on - strand, within CSW01_03245at 650.534 kb on - strand, within CSW01_03245at 650.536 kb on - strand, within CSW01_03245at 650.536 kb on - strand, within CSW01_03245at 650.553 kb on + strand, within CSW01_03245at 650.576 kb on + strand, within CSW01_03245at 650.613 kb on - strand, within CSW01_03245at 650.613 kb on - strand, within CSW01_03245at 650.654 kb on + strand, within CSW01_03245at 650.667 kb on - strand, within CSW01_03245at 650.695 kb on - strand, within CSW01_03245at 650.848 kb on + strand, within CSW01_03245at 650.856 kb on - strand, within CSW01_03245at 650.887 kb on + strand, within CSW01_03245at 650.888 kb on + strand, within CSW01_03245at 650.911 kb on - strand, within CSW01_03245at 650.941 kb on - strand, within CSW01_03245at 650.941 kb on - strand, within CSW01_03245at 650.949 kb on + strand, within CSW01_03245at 650.965 kb on + strand, within CSW01_03245at 650.965 kb on + strand, within CSW01_03245at 650.973 kb on - strand, within CSW01_03245at 650.973 kb on - strand, within CSW01_03245at 651.014 kb on - strand, within CSW01_03245at 651.025 kb on - strand, within CSW01_03245at 651.217 kb on + strandat 651.263 kb on - strandat 651.309 kb on - strandat 651.342 kb on - strand, within CSW01_03250at 651.363 kb on + strand, within CSW01_03250at 651.449 kb on + strand, within CSW01_03250at 651.462 kb on + strand, within CSW01_03250at 651.470 kb on - strand, within CSW01_03250at 651.472 kb on + strand, within CSW01_03250at 651.572 kb on + strand, within CSW01_03250at 651.579 kb on + strand, within CSW01_03250at 651.580 kb on - strand, within CSW01_03250at 651.592 kb on - strand, within CSW01_03250at 651.598 kb on + strand, within CSW01_03250at 651.636 kb on + strand, within CSW01_03250at 651.655 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.722 kb on + strand, within CSW01_03250at 651.744 kb on + strand, within CSW01_03250at 651.827 kb on - strand, within CSW01_03250at 651.829 kb on + strand, within CSW01_03250at 651.848 kb on - strand, within CSW01_03250at 651.879 kb on + strand, within CSW01_03250at 651.889 kb on + strand, within CSW01_03250at 651.892 kb on - strand, within CSW01_03250at 651.966 kb on + strand, within CSW01_03250at 651.991 kb on - strand, within CSW01_03250at 651.991 kb on - strand, within CSW01_03250at 652.029 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.102 kb on - strand, within CSW01_03250at 652.103 kb on - strand, within CSW01_03250at 652.110 kb on - strand, within CSW01_03250

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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649,203 + CSW01_03240 0.46 +0.2
649,203 + CSW01_03240 0.46 +0.1
649,211 - CSW01_03240 0.47 -3.2
649,213 + CSW01_03240 0.47 -0.4
649,213 + CSW01_03240 0.47 +0.4
649,218 + CSW01_03240 0.47 +1.3
649,218 + CSW01_03240 0.47 +0.1
649,218 + CSW01_03240 0.47 -1.8
649,218 + CSW01_03240 0.47 -2.5
649,218 + CSW01_03240 0.47 +0.8
649,226 - CSW01_03240 0.47 -2.2
649,246 + CSW01_03240 0.49 -0.8
649,263 + CSW01_03240 0.50 +1.2
649,334 + CSW01_03240 0.54 -0.4
649,377 + CSW01_03240 0.56 -0.2
649,377 + CSW01_03240 0.56 -0.4
649,385 - CSW01_03240 0.57 +0.9
649,385 - CSW01_03240 0.57 -0.0
649,385 - CSW01_03240 0.57 +0.7
649,385 - CSW01_03240 0.57 +0.7
649,444 - CSW01_03240 0.60 +0.9
649,563 - CSW01_03240 0.67 +1.3
649,608 + CSW01_03240 0.70 -3.8
649,614 + CSW01_03240 0.70 -0.4
649,635 + CSW01_03240 0.71 -0.1
649,637 + CSW01_03240 0.71 -2.5
649,711 + CSW01_03240 0.76 +2.9
649,724 - CSW01_03240 0.76 +1.0
649,733 + CSW01_03240 0.77 -0.8
649,741 - CSW01_03240 0.77 -0.5
649,758 - CSW01_03240 0.78 +1.7
649,790 + CSW01_03240 0.80 -2.9
649,790 + CSW01_03240 0.80 +0.5
649,790 + CSW01_03240 0.80 -1.9
649,798 - CSW01_03240 0.81 -1.1
649,798 - CSW01_03240 0.81 -2.6
649,798 - CSW01_03240 0.81 -2.7
649,803 - CSW01_03240 0.81 -3.3
649,803 - CSW01_03240 0.81 -1.2
649,808 + CSW01_03240 0.81 -0.8
649,808 + CSW01_03240 0.81 +0.3
649,816 - CSW01_03240 0.82 +0.9
650,070 + +0.1
650,078 - -0.4
650,078 - +1.4
650,078 - +0.1
650,084 + +1.0
650,092 - -2.2
650,092 - +1.0
650,092 - -0.5
650,092 - +0.3
650,165 + +2.5
650,172 + +0.5
650,173 - +0.1
650,401 - CSW01_03245 0.21 -1.5
650,403 - CSW01_03245 0.21 -0.4
650,406 + CSW01_03245 0.22 +0.6
650,406 + CSW01_03245 0.22 -0.2
650,406 + CSW01_03245 0.22 -1.3
650,406 + CSW01_03245 0.22 -0.1
650,406 + CSW01_03245 0.22 +0.0
650,406 + CSW01_03245 0.22 +0.2
650,406 + CSW01_03245 0.22 +1.2
650,406 + CSW01_03245 0.22 -1.9
650,414 - CSW01_03245 0.23 +1.2
650,414 - CSW01_03245 0.23 -0.7
650,414 - CSW01_03245 0.23 +1.5
650,414 - CSW01_03245 0.23 -2.7
650,414 - CSW01_03245 0.23 +1.8
650,414 - CSW01_03245 0.23 +0.6
650,416 + CSW01_03245 0.23 -1.6
650,442 + CSW01_03245 0.25 -1.7
650,528 + CSW01_03245 0.34 -0.4
650,534 - CSW01_03245 0.35 -0.2
650,534 - CSW01_03245 0.35 +1.7
650,536 - CSW01_03245 0.35 +0.3
650,536 - CSW01_03245 0.35 +1.2
650,553 + CSW01_03245 0.37 +1.0
650,576 + CSW01_03245 0.39 +0.6
650,613 - CSW01_03245 0.43 +1.0
650,613 - CSW01_03245 0.43 +2.8
650,654 + CSW01_03245 0.47 +0.7
650,667 - CSW01_03245 0.48 +0.8
650,695 - CSW01_03245 0.51 -2.9
650,848 + CSW01_03245 0.66 -0.2
650,856 - CSW01_03245 0.67 -2.1
650,887 + CSW01_03245 0.70 +0.1
650,888 + CSW01_03245 0.70 -2.3
650,911 - CSW01_03245 0.72 +0.2
650,941 - CSW01_03245 0.76 +0.2
650,941 - CSW01_03245 0.76 -0.4
650,949 + CSW01_03245 0.76 -1.7
650,965 + CSW01_03245 0.78 -2.4
650,965 + CSW01_03245 0.78 -0.4
650,973 - CSW01_03245 0.79 -0.6
650,973 - CSW01_03245 0.79 -2.6
651,014 - CSW01_03245 0.83 +2.1
651,025 - CSW01_03245 0.84 +1.0
651,217 + -0.6
651,263 - -1.7
651,309 - -3.0
651,342 - CSW01_03250 0.12 +1.3
651,363 + CSW01_03250 0.14 +2.3
651,449 + CSW01_03250 0.23 +0.4
651,462 + CSW01_03250 0.24 +1.8
651,470 - CSW01_03250 0.25 -0.8
651,472 + CSW01_03250 0.25 -0.6
651,572 + CSW01_03250 0.35 +1.9
651,579 + CSW01_03250 0.36 +0.6
651,580 - CSW01_03250 0.36 -1.0
651,592 - CSW01_03250 0.37 -0.2
651,598 + CSW01_03250 0.38 -0.4
651,636 + CSW01_03250 0.42 +1.1
651,655 + CSW01_03250 0.43 -0.1
651,666 + CSW01_03250 0.45 -0.4
651,666 + CSW01_03250 0.45 +0.2
651,666 + CSW01_03250 0.45 -3.2
651,674 - CSW01_03250 0.45 +2.3
651,674 - CSW01_03250 0.45 -0.4
651,674 - CSW01_03250 0.45 -0.2
651,674 - CSW01_03250 0.45 -0.2
651,674 - CSW01_03250 0.45 -0.6
651,674 - CSW01_03250 0.45 +0.6
651,674 - CSW01_03250 0.45 +0.7
651,722 + CSW01_03250 0.50 +0.6
651,744 + CSW01_03250 0.53 -1.0
651,827 - CSW01_03250 0.61 +1.5
651,829 + CSW01_03250 0.61 +0.3
651,848 - CSW01_03250 0.63 +0.6
651,879 + CSW01_03250 0.66 -0.5
651,889 + CSW01_03250 0.67 -0.9
651,892 - CSW01_03250 0.68 -0.9
651,966 + CSW01_03250 0.75 +1.0
651,991 - CSW01_03250 0.78 +1.5
651,991 - CSW01_03250 0.78 -1.5
652,029 + CSW01_03250 0.82 +1.7
652,094 + CSW01_03250 0.88 -1.0
652,094 + CSW01_03250 0.88 +0.3
652,094 + CSW01_03250 0.88 +0.7
652,102 - CSW01_03250 0.89 -1.7
652,103 - CSW01_03250 0.89 -0.7
652,110 - CSW01_03250 0.90 +0.6

Or see this region's nucleotide sequence