Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03155

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03150 and CSW01_03155 are separated by 73 nucleotidesCSW01_03155 and CSW01_03160 are separated by 124 nucleotides CSW01_03150: CSW01_03150 - tRNA glutamyl-Q(34) synthetase GluQRS, at 621,078 to 621,968 _03150 CSW01_03155: CSW01_03155 - RNA polymerase-binding transcription factor DksA, at 622,042 to 622,488 _03155 CSW01_03160: CSW01_03160 - DNA/RNA nuclease SfsA, at 622,613 to 623,383 _03160 Position (kb) 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 621.203 kb on + strand, within CSW01_03150at 621.211 kb on - strand, within CSW01_03150at 621.237 kb on + strand, within CSW01_03150at 621.257 kb on + strand, within CSW01_03150at 621.336 kb on + strand, within CSW01_03150at 621.355 kb on + strand, within CSW01_03150at 621.395 kb on + strand, within CSW01_03150at 621.436 kb on - strand, within CSW01_03150at 621.436 kb on - strand, within CSW01_03150at 621.518 kb on - strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.685 kb on + strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.765 kb on - strand, within CSW01_03150at 621.790 kb on - strand, within CSW01_03150at 621.801 kb on + strand, within CSW01_03150at 621.819 kb on - strand, within CSW01_03150at 621.842 kb on + strand, within CSW01_03150at 621.953 kb on + strandat 622.028 kb on - strandat 622.096 kb on + strand, within CSW01_03155at 622.106 kb on - strand, within CSW01_03155at 622.175 kb on + strand, within CSW01_03155at 622.240 kb on - strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.309 kb on - strand, within CSW01_03155at 622.364 kb on + strand, within CSW01_03155at 622.400 kb on + strand, within CSW01_03155at 622.402 kb on + strand, within CSW01_03155at 622.410 kb on - strand, within CSW01_03155at 622.435 kb on + strand, within CSW01_03155at 622.646 kb on - strandat 622.686 kb on + strandat 622.686 kb on + strandat 622.694 kb on - strand, within CSW01_03160at 622.737 kb on + strand, within CSW01_03160at 622.749 kb on + strand, within CSW01_03160at 622.803 kb on - strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.848 kb on + strand, within CSW01_03160at 622.856 kb on + strand, within CSW01_03160at 622.864 kb on - strand, within CSW01_03160at 622.891 kb on + strand, within CSW01_03160at 622.908 kb on + strand, within CSW01_03160at 622.945 kb on + strand, within CSW01_03160at 622.953 kb on - strand, within CSW01_03160at 623.010 kb on + strand, within CSW01_03160at 623.017 kb on + strand, within CSW01_03160at 623.018 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.047 kb on + strand, within CSW01_03160at 623.088 kb on + strand, within CSW01_03160at 623.096 kb on - strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.135 kb on - strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.194 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.207 kb on - strand, within CSW01_03160at 623.231 kb on - strand, within CSW01_03160at 623.232 kb on + strand, within CSW01_03160at 623.241 kb on + strand, within CSW01_03160at 623.324 kb on + strandat 623.362 kb on - strandat 623.381 kb on + strandat 623.451 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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621,203 + CSW01_03150 0.14 -0.4
621,211 - CSW01_03150 0.15 -1.5
621,237 + CSW01_03150 0.18 -2.2
621,257 + CSW01_03150 0.20 +0.5
621,336 + CSW01_03150 0.29 -2.1
621,355 + CSW01_03150 0.31 -2.9
621,395 + CSW01_03150 0.36 +1.4
621,436 - CSW01_03150 0.40 +0.2
621,436 - CSW01_03150 0.40 -1.2
621,518 - CSW01_03150 0.49 -0.8
621,684 + CSW01_03150 0.68 -0.7
621,684 + CSW01_03150 0.68 -0.7
621,684 + CSW01_03150 0.68 +1.3
621,684 + CSW01_03150 0.68 +0.5
621,684 + CSW01_03150 0.68 +1.2
621,684 + CSW01_03150 0.68 -1.1
621,685 + CSW01_03150 0.68 -1.7
621,692 - CSW01_03150 0.69 +0.3
621,692 - CSW01_03150 0.69 +1.1
621,694 + CSW01_03150 0.69 +0.6
621,694 + CSW01_03150 0.69 +1.5
621,694 + CSW01_03150 0.69 -1.1
621,694 + CSW01_03150 0.69 -0.6
621,765 - CSW01_03150 0.77 +0.7
621,790 - CSW01_03150 0.80 -0.8
621,801 + CSW01_03150 0.81 +0.2
621,819 - CSW01_03150 0.83 +1.6
621,842 + CSW01_03150 0.86 -0.0
621,953 + +0.1
622,028 - +1.1
622,096 + CSW01_03155 0.12 +2.3
622,106 - CSW01_03155 0.14 -1.4
622,175 + CSW01_03155 0.30 +1.4
622,240 - CSW01_03155 0.44 +3.2
622,242 + CSW01_03155 0.45 -3.0
622,242 + CSW01_03155 0.45 -1.3
622,242 + CSW01_03155 0.45 +2.3
622,242 + CSW01_03155 0.45 -1.0
622,242 + CSW01_03155 0.45 -0.9
622,242 + CSW01_03155 0.45 +0.2
622,250 - CSW01_03155 0.47 -1.7
622,250 - CSW01_03155 0.47 +2.9
622,250 - CSW01_03155 0.47 +1.7
622,250 - CSW01_03155 0.47 -0.6
622,250 - CSW01_03155 0.47 +1.0
622,250 - CSW01_03155 0.47 +1.7
622,250 - CSW01_03155 0.47 +1.0
622,250 - CSW01_03155 0.47 +0.5
622,250 - CSW01_03155 0.47 +1.2
622,250 - CSW01_03155 0.47 +2.8
622,309 - CSW01_03155 0.60 +2.6
622,364 + CSW01_03155 0.72 +2.1
622,400 + CSW01_03155 0.80 +5.3
622,402 + CSW01_03155 0.81 +1.5
622,410 - CSW01_03155 0.82 -1.6
622,435 + CSW01_03155 0.88 +0.9
622,646 - -1.2
622,686 + +0.8
622,686 + +1.2
622,694 - CSW01_03160 0.11 -0.7
622,737 + CSW01_03160 0.16 -1.3
622,749 + CSW01_03160 0.18 -1.9
622,803 - CSW01_03160 0.25 -1.0
622,833 + CSW01_03160 0.29 +0.1
622,833 + CSW01_03160 0.29 -2.8
622,848 + CSW01_03160 0.30 +1.2
622,856 + CSW01_03160 0.32 -1.7
622,864 - CSW01_03160 0.33 +1.3
622,891 + CSW01_03160 0.36 +0.4
622,908 + CSW01_03160 0.38 +1.4
622,945 + CSW01_03160 0.43 -2.5
622,953 - CSW01_03160 0.44 -1.4
623,010 + CSW01_03160 0.51 +0.1
623,017 + CSW01_03160 0.52 -0.8
623,018 - CSW01_03160 0.53 +0.2
623,040 - CSW01_03160 0.55 +1.6
623,040 - CSW01_03160 0.55 -0.8
623,047 + CSW01_03160 0.56 -0.7
623,088 + CSW01_03160 0.62 -2.6
623,096 - CSW01_03160 0.63 +0.0
623,127 + CSW01_03160 0.67 +0.5
623,127 + CSW01_03160 0.67 +0.9
623,127 + CSW01_03160 0.67 -0.8
623,127 + CSW01_03160 0.67 -1.9
623,127 + CSW01_03160 0.67 -0.7
623,135 - CSW01_03160 0.68 -3.1
623,143 + CSW01_03160 0.69 +0.3
623,143 + CSW01_03160 0.69 +1.5
623,194 + CSW01_03160 0.75 -1.7
623,199 + CSW01_03160 0.76 +0.5
623,199 + CSW01_03160 0.76 +0.4
623,207 - CSW01_03160 0.77 +0.1
623,231 - CSW01_03160 0.80 -2.8
623,232 + CSW01_03160 0.80 -1.9
623,241 + CSW01_03160 0.81 -2.0
623,324 + +1.4
623,362 - -1.2
623,381 + -0.6
623,451 + +0.1
623,461 + -0.2
623,461 + -0.3
623,461 + +0.2
623,461 + +1.3
623,461 + -0.1
623,461 + -0.3
623,461 + +0.9
623,469 - +0.4
623,469 - -0.7
623,469 - -2.2
623,469 - +0.8
623,469 - -0.7
623,469 - -0.2
623,469 - -1.5
623,469 - -0.9
623,469 - -0.9
623,469 - +2.1
623,484 + +1.2

Or see this region's nucleotide sequence