Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03040 and CSW01_03045 are separated by 327 nucleotides CSW01_03045 and CSW01_03050 overlap by 1 nucleotides CSW01_03050 and CSW01_03055 overlap by 4 nucleotides CSW01_03055 and CSW01_03060 are separated by 99 nucleotides
CSW01_03040: CSW01_03040 - 30S ribosomal protein S9, at 602,240 to 602,632
_03040
CSW01_03045: CSW01_03045 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 602,960 to 603,553
_03045
CSW01_03050: CSW01_03050 - cytochrome b, at 603,553 to 604,818
_03050
CSW01_03055: CSW01_03055 - cytochrome c1, at 604,815 to 605,552
_03055
CSW01_03060: CSW01_03060 - stringent starvation protein A, at 605,652 to 606,287
_03060
Position (kb) 603
604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 602.748 kb on + strand at 602.938 kb on + strand at 603.140 kb on - strand, within CSW01_03045 at 603.263 kb on - strand, within CSW01_03045 at 603.265 kb on + strand, within CSW01_03045 at 603.335 kb on + strand, within CSW01_03045 at 603.335 kb on + strand, within CSW01_03045 at 603.343 kb on - strand, within CSW01_03045 at 603.343 kb on - strand, within CSW01_03045 at 603.479 kb on - strand, within CSW01_03045 at 603.749 kb on + strand, within CSW01_03050 at 604.017 kb on + strand, within CSW01_03050 at 604.017 kb on + strand, within CSW01_03050 at 604.151 kb on - strand, within CSW01_03050 at 604.277 kb on - strand, within CSW01_03050 at 604.375 kb on + strand, within CSW01_03050 at 604.378 kb on - strand, within CSW01_03050 at 604.629 kb on + strand, within CSW01_03050 at 604.642 kb on - strand, within CSW01_03050 at 604.652 kb on - strand, within CSW01_03050 at 604.686 kb on + strand, within CSW01_03050 at 604.701 kb on - strand at 605.150 kb on + strand, within CSW01_03055 at 605.158 kb on - strand, within CSW01_03055 at 605.239 kb on - strand, within CSW01_03055 at 605.287 kb on - strand, within CSW01_03055 at 605.358 kb on - strand, within CSW01_03055 at 605.403 kb on + strand, within CSW01_03055 at 605.566 kb on - strand at 605.602 kb on + strand at 605.602 kb on + strand at 605.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 602,748 + -0.1 602,938 + -2.6 603,140 - CSW01_03045 0.30 -0.4 603,263 - CSW01_03045 0.51 +1.8 603,265 + CSW01_03045 0.51 +0.2 603,335 + CSW01_03045 0.63 -0.8 603,335 + CSW01_03045 0.63 -0.7 603,343 - CSW01_03045 0.64 +0.4 603,343 - CSW01_03045 0.64 +1.9 603,479 - CSW01_03045 0.87 -0.2 603,749 + CSW01_03050 0.15 +1.3 604,017 + CSW01_03050 0.37 -0.0 604,017 + CSW01_03050 0.37 +1.0 604,151 - CSW01_03050 0.47 -0.2 604,277 - CSW01_03050 0.57 -2.5 604,375 + CSW01_03050 0.65 -3.6 604,378 - CSW01_03050 0.65 -0.6 604,629 + CSW01_03050 0.85 -1.1 604,642 - CSW01_03050 0.86 +0.4 604,652 - CSW01_03050 0.87 +0.2 604,686 + CSW01_03050 0.89 -0.4 604,701 - -4.3 605,150 + CSW01_03055 0.45 -0.8 605,158 - CSW01_03055 0.46 +0.2 605,239 - CSW01_03055 0.57 -1.2 605,287 - CSW01_03055 0.64 +1.1 605,358 - CSW01_03055 0.74 +0.7 605,403 + CSW01_03055 0.80 -2.9 605,566 - -0.6 605,602 + -3.0 605,602 + +1.0 605,645 - +1.5
Or see this region's nucleotide sequence