Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02835

Experiment: ICP1_phage_2.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02830 and CSW01_02835 are separated by 73 nucleotidesCSW01_02835 and CSW01_02840 are separated by 92 nucleotides CSW01_02830: CSW01_02830 - murein hydrolase activator NlpD, at 562,464 to 563,399 _02830 CSW01_02835: CSW01_02835 - RNA polymerase sigma factor RpoS, at 563,473 to 564,480 _02835 CSW01_02840: CSW01_02840 - DNA mismatch repair protein MutS, at 564,573 to 567,161 _02840 Position (kb) 563 564 565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 562.522 kb on + strandat 562.530 kb on - strandat 562.530 kb on - strandat 562.592 kb on + strand, within CSW01_02830at 562.633 kb on + strand, within CSW01_02830at 562.697 kb on + strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.714 kb on - strand, within CSW01_02830at 562.786 kb on - strand, within CSW01_02830at 562.962 kb on - strand, within CSW01_02830at 562.969 kb on - strand, within CSW01_02830at 563.012 kb on + strand, within CSW01_02830at 563.025 kb on + strand, within CSW01_02830at 563.060 kb on + strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.139 kb on + strand, within CSW01_02830at 563.142 kb on - strand, within CSW01_02830at 563.147 kb on - strand, within CSW01_02830at 563.168 kb on + strand, within CSW01_02830at 563.236 kb on - strand, within CSW01_02830at 563.292 kb on + strand, within CSW01_02830at 563.332 kb on + strandat 563.332 kb on - strandat 563.402 kb on - strandat 563.456 kb on + strandat 563.461 kb on - strandat 563.464 kb on - strandat 563.605 kb on - strand, within CSW01_02835at 563.616 kb on + strand, within CSW01_02835at 563.636 kb on + strand, within CSW01_02835at 563.636 kb on + strand, within CSW01_02835at 563.644 kb on - strand, within CSW01_02835at 563.706 kb on + strand, within CSW01_02835at 563.735 kb on - strand, within CSW01_02835at 563.821 kb on - strand, within CSW01_02835at 563.821 kb on - strand, within CSW01_02835at 563.823 kb on + strand, within CSW01_02835at 563.841 kb on + strand, within CSW01_02835at 563.848 kb on - strand, within CSW01_02835at 563.849 kb on - strand, within CSW01_02835at 563.859 kb on - strand, within CSW01_02835at 563.907 kb on - strand, within CSW01_02835at 563.969 kb on + strand, within CSW01_02835at 563.974 kb on - strand, within CSW01_02835at 564.026 kb on + strand, within CSW01_02835at 564.034 kb on - strand, within CSW01_02835at 564.034 kb on - strand, within CSW01_02835at 564.046 kb on - strand, within CSW01_02835at 564.124 kb on + strand, within CSW01_02835at 564.129 kb on + strand, within CSW01_02835at 564.137 kb on - strand, within CSW01_02835at 564.137 kb on - strand, within CSW01_02835at 564.159 kb on + strand, within CSW01_02835at 564.270 kb on + strand, within CSW01_02835at 564.283 kb on - strand, within CSW01_02835at 564.305 kb on + strand, within CSW01_02835at 564.305 kb on + strand, within CSW01_02835at 564.320 kb on + strand, within CSW01_02835at 564.320 kb on + strand, within CSW01_02835at 564.357 kb on + strand, within CSW01_02835at 564.401 kb on - strandat 564.408 kb on - strandat 564.408 kb on - strandat 564.408 kb on - strandat 564.456 kb on + strandat 564.464 kb on - strandat 564.521 kb on + strandat 564.603 kb on + strandat 564.603 kb on + strandat 564.603 kb on + strandat 564.611 kb on - strandat 564.619 kb on + strandat 564.619 kb on + strandat 564.637 kb on - strandat 564.637 kb on - strandat 564.672 kb on - strandat 564.742 kb on - strandat 564.747 kb on - strandat 564.758 kb on - strandat 564.842 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.849 kb on + strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.857 kb on - strand, within CSW01_02840at 564.887 kb on + strand, within CSW01_02840at 564.938 kb on + strand, within CSW01_02840at 564.955 kb on - strand, within CSW01_02840at 564.955 kb on - strand, within CSW01_02840at 564.969 kb on - strand, within CSW01_02840at 564.969 kb on - strand, within CSW01_02840at 564.969 kb on - strand, within CSW01_02840at 565.006 kb on + strand, within CSW01_02840at 565.218 kb on - strand, within CSW01_02840at 565.301 kb on - strand, within CSW01_02840at 565.303 kb on + strand, within CSW01_02840at 565.311 kb on - strand, within CSW01_02840at 565.374 kb on + strand, within CSW01_02840at 565.374 kb on + strand, within CSW01_02840at 565.374 kb on + strand, within CSW01_02840at 565.378 kb on + strand, within CSW01_02840at 565.382 kb on - strand, within CSW01_02840at 565.382 kb on - strand, within CSW01_02840at 565.394 kb on - strand, within CSW01_02840at 565.396 kb on + strand, within CSW01_02840at 565.396 kb on + strand, within CSW01_02840at 565.404 kb on - strand, within CSW01_02840at 565.450 kb on - strand, within CSW01_02840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
remove
562,522 + -2.9
562,530 - +0.6
562,530 - +1.0
562,592 + CSW01_02830 0.14 +0.1
562,633 + CSW01_02830 0.18 +2.4
562,697 + CSW01_02830 0.25 -2.7
562,705 - CSW01_02830 0.26 -0.8
562,705 - CSW01_02830 0.26 +0.6
562,714 - CSW01_02830 0.27 -1.6
562,786 - CSW01_02830 0.34 +0.9
562,962 - CSW01_02830 0.53 +1.1
562,969 - CSW01_02830 0.54 +0.6
563,012 + CSW01_02830 0.59 +0.7
563,025 + CSW01_02830 0.60 -2.7
563,060 + CSW01_02830 0.64 -0.4
563,114 - CSW01_02830 0.69 +2.0
563,114 - CSW01_02830 0.69 +0.1
563,139 + CSW01_02830 0.72 +0.7
563,142 - CSW01_02830 0.72 +0.2
563,147 - CSW01_02830 0.73 -1.4
563,168 + CSW01_02830 0.75 +1.4
563,236 - CSW01_02830 0.82 +1.6
563,292 + CSW01_02830 0.88 +0.3
563,332 + +1.0
563,332 - +1.7
563,402 - +0.3
563,456 + +1.1
563,461 - +3.1
563,464 - +0.6
563,605 - CSW01_02835 0.13 +0.1
563,616 + CSW01_02835 0.14 -1.6
563,636 + CSW01_02835 0.16 -0.8
563,636 + CSW01_02835 0.16 +1.3
563,644 - CSW01_02835 0.17 +1.1
563,706 + CSW01_02835 0.23 +3.0
563,735 - CSW01_02835 0.26 +1.6
563,821 - CSW01_02835 0.35 +1.6
563,821 - CSW01_02835 0.35 +1.2
563,823 + CSW01_02835 0.35 +1.9
563,841 + CSW01_02835 0.37 +0.9
563,848 - CSW01_02835 0.37 +1.6
563,849 - CSW01_02835 0.37 -0.2
563,859 - CSW01_02835 0.38 +2.5
563,907 - CSW01_02835 0.43 -0.2
563,969 + CSW01_02835 0.49 -0.8
563,974 - CSW01_02835 0.50 +2.0
564,026 + CSW01_02835 0.55 +1.9
564,034 - CSW01_02835 0.56 -0.7
564,034 - CSW01_02835 0.56 +0.5
564,046 - CSW01_02835 0.57 +0.5
564,124 + CSW01_02835 0.65 +1.0
564,129 + CSW01_02835 0.65 +1.1
564,137 - CSW01_02835 0.66 +1.3
564,137 - CSW01_02835 0.66 +1.6
564,159 + CSW01_02835 0.68 +0.5
564,270 + CSW01_02835 0.79 +1.7
564,283 - CSW01_02835 0.80 -0.3
564,305 + CSW01_02835 0.83 +2.2
564,305 + CSW01_02835 0.83 +1.0
564,320 + CSW01_02835 0.84 -0.4
564,320 + CSW01_02835 0.84 +0.9
564,357 + CSW01_02835 0.88 +1.6
564,401 - +0.3
564,408 - +0.4
564,408 - +0.2
564,408 - +1.9
564,456 + +0.9
564,464 - -1.7
564,521 + +0.7
564,603 + -0.3
564,603 + -2.2
564,603 + +1.4
564,611 - +1.4
564,619 + -1.8
564,619 + -0.0
564,637 - -2.5
564,637 - -2.3
564,672 - +2.0
564,742 - -0.7
564,747 - -0.4
564,758 - +1.5
564,842 + CSW01_02840 0.10 -4.1
564,849 + CSW01_02840 0.11 +0.7
564,849 + CSW01_02840 0.11 +1.2
564,849 + CSW01_02840 0.11 -0.2
564,849 + CSW01_02840 0.11 +1.1
564,849 + CSW01_02840 0.11 -0.1
564,849 + CSW01_02840 0.11 -4.1
564,849 + CSW01_02840 0.11 -0.5
564,849 + CSW01_02840 0.11 +0.0
564,849 + CSW01_02840 0.11 +0.4
564,849 + CSW01_02840 0.11 +1.8
564,849 + CSW01_02840 0.11 +0.5
564,849 + CSW01_02840 0.11 +0.7
564,849 + CSW01_02840 0.11 +0.6
564,849 + CSW01_02840 0.11 -1.5
564,849 + CSW01_02840 0.11 +0.2
564,849 + CSW01_02840 0.11 +0.2
564,857 - CSW01_02840 0.11 -0.8
564,857 - CSW01_02840 0.11 +0.8
564,857 - CSW01_02840 0.11 -2.3
564,857 - CSW01_02840 0.11 +0.6
564,857 - CSW01_02840 0.11 -0.5
564,857 - CSW01_02840 0.11 +0.2
564,857 - CSW01_02840 0.11 +0.6
564,857 - CSW01_02840 0.11 +1.1
564,857 - CSW01_02840 0.11 +0.2
564,857 - CSW01_02840 0.11 +0.1
564,857 - CSW01_02840 0.11 -0.9
564,887 + CSW01_02840 0.12 -0.5
564,938 + CSW01_02840 0.14 +0.3
564,955 - CSW01_02840 0.15 +0.8
564,955 - CSW01_02840 0.15 -0.1
564,969 - CSW01_02840 0.15 -1.6
564,969 - CSW01_02840 0.15 -0.5
564,969 - CSW01_02840 0.15 -0.6
565,006 + CSW01_02840 0.17 +1.0
565,218 - CSW01_02840 0.25 +0.7
565,301 - CSW01_02840 0.28 +0.2
565,303 + CSW01_02840 0.28 -1.6
565,311 - CSW01_02840 0.29 -2.3
565,374 + CSW01_02840 0.31 +0.8
565,374 + CSW01_02840 0.31 -3.9
565,374 + CSW01_02840 0.31 +0.2
565,378 + CSW01_02840 0.31 -0.9
565,382 - CSW01_02840 0.31 -0.1
565,382 - CSW01_02840 0.31 +0.9
565,394 - CSW01_02840 0.32 +1.7
565,396 + CSW01_02840 0.32 +0.4
565,396 + CSW01_02840 0.32 -0.6
565,404 - CSW01_02840 0.32 +0.9
565,450 - CSW01_02840 0.34 +1.2

Or see this region's nucleotide sequence