Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02735

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02730 and CSW01_02735 are separated by 389 nucleotidesCSW01_02735 and CSW01_02740 are separated by 165 nucleotidesCSW01_02740 and CSW01_02745 are separated by 144 nucleotides CSW01_02730: CSW01_02730 - diguanylate phosphodiesterase, at 545,897 to 547,129 _02730 CSW01_02735: CSW01_02735 - integrase, at 547,519 to 548,760 _02735 CSW01_02740: CSW01_02740 - tRNA-Met, at 548,926 to 549,001 _02740 CSW01_02745: CSW01_02745 - RNA polymerase sigma factor RpoD, at 549,146 to 551,023 _02745 Position (kb) 547 548 549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 546.519 kb on + strand, within CSW01_02730at 546.519 kb on + strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.527 kb on - strand, within CSW01_02730at 546.591 kb on + strand, within CSW01_02730at 546.598 kb on + strand, within CSW01_02730at 546.598 kb on + strand, within CSW01_02730at 546.598 kb on + strand, within CSW01_02730at 546.603 kb on + strand, within CSW01_02730at 546.606 kb on - strand, within CSW01_02730at 546.667 kb on - strand, within CSW01_02730at 546.680 kb on + strand, within CSW01_02730at 546.726 kb on + strand, within CSW01_02730at 546.726 kb on + strand, within CSW01_02730at 546.726 kb on + strand, within CSW01_02730at 546.726 kb on + strand, within CSW01_02730at 546.734 kb on - strand, within CSW01_02730at 546.734 kb on - strand, within CSW01_02730at 546.734 kb on - strand, within CSW01_02730at 546.746 kb on - strand, within CSW01_02730at 546.874 kb on - strand, within CSW01_02730at 546.874 kb on - strand, within CSW01_02730at 546.874 kb on - strand, within CSW01_02730at 546.938 kb on + strand, within CSW01_02730at 546.967 kb on + strand, within CSW01_02730at 546.975 kb on - strand, within CSW01_02730at 546.975 kb on - strand, within CSW01_02730at 546.998 kb on + strand, within CSW01_02730at 546.998 kb on + strand, within CSW01_02730at 546.998 kb on + strand, within CSW01_02730at 547.004 kb on - strand, within CSW01_02730at 547.006 kb on - strandat 547.006 kb on - strandat 547.014 kb on - strandat 547.014 kb on - strandat 547.066 kb on + strandat 547.082 kb on + strandat 547.082 kb on + strandat 547.082 kb on + strandat 547.091 kb on + strandat 547.092 kb on + strandat 547.092 kb on + strandat 547.137 kb on - strandat 547.137 kb on - strandat 547.232 kb on + strandat 547.371 kb on + strandat 547.371 kb on + strandat 547.379 kb on - strandat 547.379 kb on - strandat 547.379 kb on - strandat 547.448 kb on + strandat 547.448 kb on + strandat 547.516 kb on + strandat 547.524 kb on - strandat 547.524 kb on - strandat 547.537 kb on - strandat 547.537 kb on - strandat 547.575 kb on - strandat 547.580 kb on - strandat 547.620 kb on + strandat 547.620 kb on + strandat 547.620 kb on + strandat 547.620 kb on + strandat 547.620 kb on + strandat 547.620 kb on + strandat 547.624 kb on + strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.628 kb on - strandat 547.629 kb on + strandat 547.629 kb on + strandat 547.629 kb on + strandat 547.629 kb on + strandat 547.629 kb on + strandat 547.634 kb on + strandat 547.634 kb on + strandat 547.637 kb on - strandat 547.637 kb on - strandat 547.637 kb on - strandat 547.637 kb on - strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.639 kb on + strandat 547.640 kb on - strandat 547.642 kb on - strandat 547.642 kb on - strandat 547.642 kb on - strandat 547.642 kb on - strandat 547.642 kb on - strandat 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.647 kb on - strand, within CSW01_02735at 547.656 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.675 kb on + strand, within CSW01_02735at 547.683 kb on - strand, within CSW01_02735at 547.688 kb on - strand, within CSW01_02735at 547.722 kb on + strand, within CSW01_02735at 547.722 kb on + strand, within CSW01_02735at 547.730 kb on - strand, within CSW01_02735at 547.732 kb on + strand, within CSW01_02735at 547.746 kb on + strand, within CSW01_02735at 547.746 kb on + strand, within CSW01_02735at 547.754 kb on - strand, within CSW01_02735at 547.776 kb on - strand, within CSW01_02735at 547.776 kb on - strand, within CSW01_02735at 547.781 kb on - strand, within CSW01_02735at 547.783 kb on + strand, within CSW01_02735at 547.897 kb on + strand, within CSW01_02735at 547.922 kb on - strand, within CSW01_02735at 547.927 kb on - strand, within CSW01_02735at 547.978 kb on + strand, within CSW01_02735at 548.005 kb on + strand, within CSW01_02735at 548.010 kb on + strand, within CSW01_02735at 548.015 kb on + strand, within CSW01_02735at 548.016 kb on - strand, within CSW01_02735at 548.016 kb on - strand, within CSW01_02735at 548.018 kb on - strand, within CSW01_02735at 548.045 kb on + strand, within CSW01_02735at 548.104 kb on - strand, within CSW01_02735at 548.176 kb on + strand, within CSW01_02735at 548.177 kb on - strand, within CSW01_02735at 548.177 kb on - strand, within CSW01_02735at 548.244 kb on - strand, within CSW01_02735at 548.354 kb on - strand, within CSW01_02735at 548.392 kb on - strand, within CSW01_02735at 548.483 kb on + strand, within CSW01_02735at 548.491 kb on - strand, within CSW01_02735at 548.493 kb on + strand, within CSW01_02735at 548.630 kb on + strand, within CSW01_02735at 548.664 kb on + strandat 548.678 kb on + strandat 548.782 kb on + strandat 548.826 kb on - strandat 548.894 kb on - strandat 549.063 kb on - strandat 549.110 kb on - strandat 549.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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546,519 + CSW01_02730 0.50 -4.0
546,519 + CSW01_02730 0.50 +0.4
546,527 - CSW01_02730 0.51 +0.3
546,527 - CSW01_02730 0.51 -3.3
546,527 - CSW01_02730 0.51 -3.3
546,527 - CSW01_02730 0.51 -3.0
546,527 - CSW01_02730 0.51 -2.8
546,527 - CSW01_02730 0.51 -1.0
546,591 + CSW01_02730 0.56 -1.7
546,598 + CSW01_02730 0.57 +0.5
546,598 + CSW01_02730 0.57 -0.3
546,598 + CSW01_02730 0.57 +0.2
546,603 + CSW01_02730 0.57 +0.4
546,606 - CSW01_02730 0.58 -0.7
546,667 - CSW01_02730 0.62 -0.4
546,680 + CSW01_02730 0.64 -3.3
546,726 + CSW01_02730 0.67 +1.8
546,726 + CSW01_02730 0.67 +0.4
546,726 + CSW01_02730 0.67 -0.3
546,726 + CSW01_02730 0.67 -0.2
546,734 - CSW01_02730 0.68 -2.8
546,734 - CSW01_02730 0.68 +1.5
546,734 - CSW01_02730 0.68 -0.6
546,746 - CSW01_02730 0.69 -2.2
546,874 - CSW01_02730 0.79 -0.5
546,874 - CSW01_02730 0.79 +1.7
546,874 - CSW01_02730 0.79 +0.0
546,938 + CSW01_02730 0.84 +0.7
546,967 + CSW01_02730 0.87 +0.2
546,975 - CSW01_02730 0.87 -3.8
546,975 - CSW01_02730 0.87 +0.4
546,998 + CSW01_02730 0.89 +1.0
546,998 + CSW01_02730 0.89 +0.3
546,998 + CSW01_02730 0.89 +0.4
547,004 - CSW01_02730 0.90 -0.7
547,006 - -2.2
547,006 - -2.1
547,014 - +0.8
547,014 - -0.8
547,066 + -0.1
547,082 + -2.0
547,082 + +1.2
547,082 + -4.1
547,091 + +0.6
547,092 + +0.3
547,092 + +0.4
547,137 - +0.7
547,137 - +0.3
547,232 + +0.6
547,371 + -0.6
547,371 + -0.5
547,379 - -2.6
547,379 - +1.3
547,379 - +1.5
547,448 + -0.2
547,448 + +1.4
547,516 + -1.1
547,524 - +0.7
547,524 - -0.0
547,537 - -0.6
547,537 - -3.6
547,575 - -3.0
547,580 - -1.8
547,620 + -2.8
547,620 + +1.9
547,620 + -0.7
547,620 + -1.0
547,620 + -0.1
547,620 + -2.0
547,624 + +0.3
547,628 - +0.5
547,628 - -3.1
547,628 - +1.4
547,628 - +0.7
547,628 - -0.1
547,628 - -1.4
547,628 - +0.4
547,628 - +0.3
547,628 - -1.3
547,628 - +0.7
547,629 + -2.3
547,629 + +1.9
547,629 + -2.3
547,629 + +1.2
547,629 + -3.7
547,634 + +0.1
547,634 + -1.3
547,637 - +0.4
547,637 - -3.6
547,637 - -1.5
547,637 - -1.3
547,639 + +1.1
547,639 + +1.2
547,639 + +0.7
547,639 + -1.5
547,639 + +0.7
547,639 + +1.3
547,639 + +0.6
547,639 + -0.1
547,639 + +0.1
547,639 + +0.5
547,639 + +1.0
547,639 + +2.5
547,639 + -3.0
547,639 + -2.3
547,639 + +0.7
547,639 + +2.5
547,639 + +0.9
547,639 + -3.2
547,640 - -0.4
547,642 - +0.3
547,642 - +1.2
547,642 - +0.4
547,642 - +0.9
547,642 - +1.2
547,647 - CSW01_02735 0.10 +0.1
547,647 - CSW01_02735 0.10 -1.3
547,647 - CSW01_02735 0.10 -2.7
547,647 - CSW01_02735 0.10 -0.1
547,647 - CSW01_02735 0.10 +0.5
547,647 - CSW01_02735 0.10 -0.9
547,647 - CSW01_02735 0.10 -1.3
547,647 - CSW01_02735 0.10 -0.2
547,647 - CSW01_02735 0.10 -1.3
547,647 - CSW01_02735 0.10 -2.0
547,647 - CSW01_02735 0.10 +2.3
547,647 - CSW01_02735 0.10 +1.3
547,647 - CSW01_02735 0.10 +0.6
547,647 - CSW01_02735 0.10 +1.7
547,656 + CSW01_02735 0.11 -0.4
547,675 + CSW01_02735 0.13 -0.1
547,675 + CSW01_02735 0.13 -0.4
547,675 + CSW01_02735 0.13 -0.2
547,675 + CSW01_02735 0.13 +0.5
547,675 + CSW01_02735 0.13 +0.5
547,675 + CSW01_02735 0.13 -0.6
547,675 + CSW01_02735 0.13 -0.3
547,675 + CSW01_02735 0.13 +1.8
547,675 + CSW01_02735 0.13 +1.6
547,675 + CSW01_02735 0.13 +1.1
547,683 - CSW01_02735 0.13 +0.9
547,688 - CSW01_02735 0.14 -2.1
547,722 + CSW01_02735 0.16 -0.3
547,722 + CSW01_02735 0.16 +1.2
547,730 - CSW01_02735 0.17 +1.2
547,732 + CSW01_02735 0.17 -0.3
547,746 + CSW01_02735 0.18 +0.2
547,746 + CSW01_02735 0.18 -3.4
547,754 - CSW01_02735 0.19 -1.9
547,776 - CSW01_02735 0.21 -3.0
547,776 - CSW01_02735 0.21 +0.8
547,781 - CSW01_02735 0.21 +0.0
547,783 + CSW01_02735 0.21 +0.5
547,897 + CSW01_02735 0.30 -3.3
547,922 - CSW01_02735 0.32 -0.8
547,927 - CSW01_02735 0.33 +0.6
547,978 + CSW01_02735 0.37 +0.4
548,005 + CSW01_02735 0.39 +1.1
548,010 + CSW01_02735 0.40 -1.1
548,015 + CSW01_02735 0.40 +1.2
548,016 - CSW01_02735 0.40 +0.6
548,016 - CSW01_02735 0.40 -0.0
548,018 - CSW01_02735 0.40 +1.0
548,045 + CSW01_02735 0.42 +0.5
548,104 - CSW01_02735 0.47 +0.5
548,176 + CSW01_02735 0.53 +0.3
548,177 - CSW01_02735 0.53 +1.6
548,177 - CSW01_02735 0.53 +0.1
548,244 - CSW01_02735 0.58 +0.2
548,354 - CSW01_02735 0.67 -2.6
548,392 - CSW01_02735 0.70 -2.7
548,483 + CSW01_02735 0.78 +0.0
548,491 - CSW01_02735 0.78 -0.9
548,493 + CSW01_02735 0.78 -2.9
548,630 + CSW01_02735 0.89 -3.1
548,664 + +1.2
548,678 + -0.3
548,782 + -2.7
548,826 - +0.5
548,894 - +0.6
549,063 - +0.8
549,110 - +1.4
549,117 - -4.2

Or see this region's nucleotide sequence