Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02640

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02625 and CSW01_02630 are separated by 53 nucleotidesCSW01_02630 and CSW01_02635 are separated by 63 nucleotidesCSW01_02635 and CSW01_02640 are separated by 81 nucleotidesCSW01_02640 and CSW01_02645 are separated by 80 nucleotides CSW01_02625: CSW01_02625 - inovirus Gp2 family protein, at 527,751 to 528,425 _02625 CSW01_02630: CSW01_02630 - inovirus Gp2 family protein, at 528,479 to 529,078 _02630 CSW01_02635: CSW01_02635 - AlpA family transcriptional regulator, at 529,142 to 529,342 _02635 CSW01_02640: CSW01_02640 - ribonuclease H, at 529,424 to 529,864 _02640 CSW01_02645: CSW01_02645 - IS3 family transposase, at 529,945 to 531,136 _02645 Position (kb) 529 530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 528.469 kb on + strandat 528.469 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.481 kb on + strandat 528.489 kb on - strandat 528.492 kb on - strandat 528.504 kb on + strandat 528.512 kb on - strandat 528.541 kb on + strand, within CSW01_02630at 528.557 kb on - strand, within CSW01_02630at 528.612 kb on - strand, within CSW01_02630at 528.655 kb on + strand, within CSW01_02630at 528.677 kb on + strand, within CSW01_02630at 528.747 kb on - strand, within CSW01_02630at 528.759 kb on - strand, within CSW01_02630at 528.772 kb on - strand, within CSW01_02630at 528.779 kb on + strand, within CSW01_02630at 528.789 kb on + strand, within CSW01_02630at 528.854 kb on - strand, within CSW01_02630at 528.868 kb on + strand, within CSW01_02630at 528.878 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.912 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 529.004 kb on + strand, within CSW01_02630at 529.012 kb on - strand, within CSW01_02630at 529.013 kb on + strand, within CSW01_02630at 529.026 kb on - strandat 529.068 kb on + strandat 529.076 kb on - strandat 529.076 kb on - strandat 529.080 kb on - strandat 529.094 kb on + strandat 529.099 kb on + strandat 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.215 kb on - strand, within CSW01_02635at 529.332 kb on + strandat 529.449 kb on + strandat 529.457 kb on - strandat 529.476 kb on - strand, within CSW01_02640at 529.481 kb on - strand, within CSW01_02640at 529.493 kb on - strand, within CSW01_02640at 529.516 kb on - strand, within CSW01_02640at 529.535 kb on - strand, within CSW01_02640at 529.545 kb on - strand, within CSW01_02640at 529.574 kb on - strand, within CSW01_02640at 529.588 kb on - strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.650 kb on - strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.694 kb on + strand, within CSW01_02640at 529.702 kb on - strand, within CSW01_02640at 529.761 kb on + strand, within CSW01_02640at 529.824 kb on - strandat 529.887 kb on + strandat 529.896 kb on - strandat 529.932 kb on - strandat 529.996 kb on + strandat 530.015 kb on + strandat 530.015 kb on + strandat 530.030 kb on + strandat 530.038 kb on - strandat 530.044 kb on + strandat 530.048 kb on - strandat 530.084 kb on - strand, within CSW01_02645at 530.101 kb on + strand, within CSW01_02645at 530.123 kb on + strand, within CSW01_02645at 530.217 kb on - strand, within CSW01_02645at 530.266 kb on - strand, within CSW01_02645at 530.273 kb on + strand, within CSW01_02645at 530.273 kb on + strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.314 kb on - strand, within CSW01_02645at 530.345 kb on + strand, within CSW01_02645at 530.353 kb on - strand, within CSW01_02645at 530.391 kb on + strand, within CSW01_02645at 530.393 kb on + strand, within CSW01_02645at 530.399 kb on - strand, within CSW01_02645at 530.402 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.415 kb on - strand, within CSW01_02645at 530.441 kb on + strand, within CSW01_02645at 530.469 kb on - strand, within CSW01_02645at 530.480 kb on + strand, within CSW01_02645at 530.546 kb on - strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.606 kb on + strand, within CSW01_02645at 530.606 kb on - strand, within CSW01_02645at 530.648 kb on - strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.715 kb on - strand, within CSW01_02645at 530.751 kb on + strand, within CSW01_02645at 530.752 kb on - strand, within CSW01_02645at 530.756 kb on + strand, within CSW01_02645at 530.757 kb on - strand, within CSW01_02645at 530.764 kb on - strand, within CSW01_02645at 530.856 kb on - strand, within CSW01_02645

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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528,469 + +0.2
528,469 + +0.2
528,470 + -0.1
528,470 + -0.2
528,470 + +0.9
528,470 + +0.6
528,470 + -2.8
528,478 - +0.3
528,478 - +2.0
528,478 - -1.0
528,478 - +0.9
528,478 - -0.1
528,478 - +1.6
528,478 - -0.6
528,478 - +0.9
528,478 - +1.0
528,478 - -1.0
528,481 + -2.0
528,489 - -0.2
528,492 - -0.2
528,504 + -0.6
528,512 - +0.5
528,541 + CSW01_02630 0.10 +1.0
528,557 - CSW01_02630 0.13 -0.6
528,612 - CSW01_02630 0.22 +0.3
528,655 + CSW01_02630 0.29 +0.2
528,677 + CSW01_02630 0.33 +0.6
528,747 - CSW01_02630 0.45 +1.0
528,759 - CSW01_02630 0.47 +0.1
528,772 - CSW01_02630 0.49 -2.0
528,779 + CSW01_02630 0.50 +0.3
528,789 + CSW01_02630 0.52 -0.8
528,854 - CSW01_02630 0.62 +0.3
528,868 + CSW01_02630 0.65 +1.1
528,878 + CSW01_02630 0.67 -0.2
528,911 + CSW01_02630 0.72 -1.4
528,911 + CSW01_02630 0.72 -3.1
528,911 + CSW01_02630 0.72 -3.2
528,911 + CSW01_02630 0.72 -0.1
528,911 + CSW01_02630 0.72 -0.2
528,912 - CSW01_02630 0.72 +0.8
528,919 - CSW01_02630 0.73 +0.8
528,919 - CSW01_02630 0.73 -3.0
528,919 - CSW01_02630 0.73 -0.4
528,919 - CSW01_02630 0.73 -0.1
528,919 - CSW01_02630 0.73 -0.2
528,919 - CSW01_02630 0.73 -3.1
529,004 + CSW01_02630 0.88 +0.2
529,012 - CSW01_02630 0.89 +0.4
529,013 + CSW01_02630 0.89 +0.6
529,026 - -0.4
529,068 + +2.7
529,076 - -1.6
529,076 - +2.7
529,080 - +0.4
529,094 + +0.2
529,099 + +0.4
529,181 + CSW01_02635 0.19 +0.5
529,181 + CSW01_02635 0.19 -3.2
529,181 + CSW01_02635 0.19 +0.6
529,181 + CSW01_02635 0.19 -0.3
529,181 + CSW01_02635 0.19 +0.6
529,181 + CSW01_02635 0.19 +0.9
529,181 + CSW01_02635 0.19 -0.3
529,181 + CSW01_02635 0.19 +0.4
529,181 + CSW01_02635 0.19 -2.3
529,181 + CSW01_02635 0.19 -0.2
529,181 + CSW01_02635 0.19 -2.4
529,181 + CSW01_02635 0.19 -1.6
529,181 + CSW01_02635 0.19 -1.4
529,189 - CSW01_02635 0.23 +0.9
529,189 - CSW01_02635 0.23 -0.1
529,189 - CSW01_02635 0.23 -1.5
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 +0.8
529,189 - CSW01_02635 0.23 -0.3
529,189 - CSW01_02635 0.23 -2.5
529,189 - CSW01_02635 0.23 +0.8
529,189 - CSW01_02635 0.23 -3.5
529,189 - CSW01_02635 0.23 +0.7
529,189 - CSW01_02635 0.23 -1.9
529,215 - CSW01_02635 0.36 -0.8
529,332 + +1.4
529,449 + +0.7
529,457 - -3.9
529,476 - CSW01_02640 0.12 -1.3
529,481 - CSW01_02640 0.13 -1.0
529,493 - CSW01_02640 0.16 +0.3
529,516 - CSW01_02640 0.21 +0.4
529,535 - CSW01_02640 0.25 +0.9
529,545 - CSW01_02640 0.27 +2.2
529,574 - CSW01_02640 0.34 -1.3
529,588 - CSW01_02640 0.37 -1.7
529,598 + CSW01_02640 0.39 +0.1
529,598 + CSW01_02640 0.39 +0.1
529,650 - CSW01_02640 0.51 -4.2
529,688 + CSW01_02640 0.60 -3.5
529,688 + CSW01_02640 0.60 +1.1
529,694 + CSW01_02640 0.61 +0.3
529,702 - CSW01_02640 0.63 +1.4
529,761 + CSW01_02640 0.76 +2.0
529,824 - +0.8
529,887 + +0.1
529,896 - +1.0
529,932 - -2.6
529,996 + +0.0
530,015 + -0.5
530,015 + -0.3
530,030 + +0.9
530,038 - +0.0
530,044 + -2.7
530,048 - -2.1
530,084 - CSW01_02645 0.12 +0.1
530,101 + CSW01_02645 0.13 +1.1
530,123 + CSW01_02645 0.15 -2.5
530,217 - CSW01_02645 0.23 -0.4
530,266 - CSW01_02645 0.27 -0.6
530,273 + CSW01_02645 0.28 +0.6
530,273 + CSW01_02645 0.28 -0.8
530,281 - CSW01_02645 0.28 -0.6
530,281 - CSW01_02645 0.28 +1.5
530,281 - CSW01_02645 0.28 -0.3
530,281 - CSW01_02645 0.28 -0.9
530,314 - CSW01_02645 0.31 -0.4
530,345 + CSW01_02645 0.34 +2.3
530,353 - CSW01_02645 0.34 -2.4
530,391 + CSW01_02645 0.37 -0.9
530,393 + CSW01_02645 0.38 +0.9
530,399 - CSW01_02645 0.38 -0.3
530,402 + CSW01_02645 0.38 +0.4
530,407 + CSW01_02645 0.39 -3.0
530,407 + CSW01_02645 0.39 +0.7
530,407 + CSW01_02645 0.39 +0.6
530,415 - CSW01_02645 0.39 +1.6
530,441 + CSW01_02645 0.42 +0.1
530,469 - CSW01_02645 0.44 +0.7
530,480 + CSW01_02645 0.45 -1.3
530,546 - CSW01_02645 0.50 -1.8
530,598 + CSW01_02645 0.55 -4.5
530,598 + CSW01_02645 0.55 +0.6
530,598 + CSW01_02645 0.55 +1.9
530,606 + CSW01_02645 0.55 -0.4
530,606 - CSW01_02645 0.55 +1.8
530,648 - CSW01_02645 0.59 -2.9
530,700 + CSW01_02645 0.63 +0.1
530,700 + CSW01_02645 0.63 +1.5
530,708 - CSW01_02645 0.64 -0.4
530,708 - CSW01_02645 0.64 -0.1
530,715 - CSW01_02645 0.65 -3.3
530,751 + CSW01_02645 0.68 +0.3
530,752 - CSW01_02645 0.68 +1.8
530,756 + CSW01_02645 0.68 +0.4
530,757 - CSW01_02645 0.68 -0.1
530,764 - CSW01_02645 0.69 -0.5
530,856 - CSW01_02645 0.76 -2.6

Or see this region's nucleotide sequence