Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02555

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02545 and CSW01_02550 are separated by 12 nucleotidesCSW01_02550 and CSW01_02555 are separated by 63 nucleotidesCSW01_02555 and CSW01_02560 are separated by 164 nucleotides CSW01_02545: CSW01_02545 - hypothetical protein, at 509,409 to 509,504 _02545 CSW01_02550: CSW01_02550 - mechanosensitive ion channel protein, at 509,517 to 510,380 _02550 CSW01_02555: CSW01_02555 - amino acid transporter, at 510,444 to 511,079 _02555 CSW01_02560: CSW01_02560 - chromosome initiation inhibitor, at 511,244 to 512,140 _02560 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 509.568 kb on - strandat 509.578 kb on - strandat 509.612 kb on + strand, within CSW01_02550at 509.645 kb on - strand, within CSW01_02550at 509.674 kb on - strand, within CSW01_02550at 509.725 kb on - strand, within CSW01_02550at 509.727 kb on + strand, within CSW01_02550at 509.734 kb on + strand, within CSW01_02550at 509.735 kb on - strand, within CSW01_02550at 509.735 kb on - strand, within CSW01_02550at 509.746 kb on + strand, within CSW01_02550at 509.746 kb on + strand, within CSW01_02550at 509.754 kb on - strand, within CSW01_02550at 509.773 kb on - strand, within CSW01_02550at 509.805 kb on - strand, within CSW01_02550at 509.870 kb on - strand, within CSW01_02550at 509.994 kb on + strand, within CSW01_02550at 509.994 kb on + strand, within CSW01_02550at 510.118 kb on + strand, within CSW01_02550at 510.254 kb on + strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.269 kb on + strand, within CSW01_02550at 510.271 kb on + strand, within CSW01_02550at 510.276 kb on + strand, within CSW01_02550at 510.279 kb on + strand, within CSW01_02550at 510.393 kb on + strandat 510.544 kb on + strand, within CSW01_02555at 510.552 kb on - strand, within CSW01_02555at 510.706 kb on + strand, within CSW01_02555at 510.865 kb on + strand, within CSW01_02555at 510.904 kb on - strand, within CSW01_02555at 510.941 kb on + strand, within CSW01_02555at 511.048 kb on - strandat 511.106 kb on + strandat 511.114 kb on - strandat 511.274 kb on + strandat 511.282 kb on - strandat 511.364 kb on - strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.399 kb on - strand, within CSW01_02560at 511.401 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.604 kb on + strand, within CSW01_02560at 511.621 kb on + strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.664 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.736 kb on + strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.833 kb on - strand, within CSW01_02560at 511.875 kb on + strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.935 kb on + strand, within CSW01_02560at 511.943 kb on - strand, within CSW01_02560at 511.954 kb on + strand, within CSW01_02560at 511.968 kb on - strand, within CSW01_02560at 512.001 kb on + strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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509,568 - -2.3
509,578 - +1.0
509,612 + CSW01_02550 0.11 +3.2
509,645 - CSW01_02550 0.15 -0.7
509,674 - CSW01_02550 0.18 +1.7
509,725 - CSW01_02550 0.24 -0.5
509,727 + CSW01_02550 0.24 +0.3
509,734 + CSW01_02550 0.25 +1.7
509,735 - CSW01_02550 0.25 +0.1
509,735 - CSW01_02550 0.25 -3.7
509,746 + CSW01_02550 0.27 -2.0
509,746 + CSW01_02550 0.27 -0.9
509,754 - CSW01_02550 0.27 +0.2
509,773 - CSW01_02550 0.30 -1.6
509,805 - CSW01_02550 0.33 -3.0
509,870 - CSW01_02550 0.41 +1.9
509,994 + CSW01_02550 0.55 -2.8
509,994 + CSW01_02550 0.55 +0.2
510,118 + CSW01_02550 0.70 +0.9
510,254 + CSW01_02550 0.85 +0.7
510,262 - CSW01_02550 0.86 -0.5
510,262 - CSW01_02550 0.86 -0.5
510,262 - CSW01_02550 0.86 -2.5
510,269 + CSW01_02550 0.87 +0.1
510,271 + CSW01_02550 0.87 -2.3
510,276 + CSW01_02550 0.88 +1.0
510,279 + CSW01_02550 0.88 -1.4
510,393 + +0.3
510,544 + CSW01_02555 0.16 +0.3
510,552 - CSW01_02555 0.17 +1.8
510,706 + CSW01_02555 0.41 +0.6
510,865 + CSW01_02555 0.66 +1.0
510,904 - CSW01_02555 0.72 +1.0
510,941 + CSW01_02555 0.78 -0.4
511,048 - +0.7
511,106 + +0.7
511,114 - -0.4
511,274 + -3.1
511,282 - +0.6
511,364 - CSW01_02560 0.13 +0.3
511,391 + CSW01_02560 0.16 +0.5
511,391 + CSW01_02560 0.16 +0.6
511,391 + CSW01_02560 0.16 +2.1
511,391 + CSW01_02560 0.16 -0.8
511,391 + CSW01_02560 0.16 +0.3
511,399 - CSW01_02560 0.17 -0.6
511,401 - CSW01_02560 0.18 -0.1
511,424 - CSW01_02560 0.20 -0.9
511,424 - CSW01_02560 0.20 -0.4
511,579 + CSW01_02560 0.37 +0.6
511,579 + CSW01_02560 0.37 -1.0
511,579 + CSW01_02560 0.37 +0.9
511,582 - CSW01_02560 0.38 -0.1
511,582 - CSW01_02560 0.38 -2.5
511,582 - CSW01_02560 0.38 +0.4
511,587 - CSW01_02560 0.38 +0.6
511,587 - CSW01_02560 0.38 -3.7
511,587 - CSW01_02560 0.38 -3.1
511,587 - CSW01_02560 0.38 -0.5
511,587 - CSW01_02560 0.38 +1.1
511,587 - CSW01_02560 0.38 +0.1
511,604 + CSW01_02560 0.40 +0.7
511,621 + CSW01_02560 0.42 -0.6
511,629 - CSW01_02560 0.43 +1.6
511,629 - CSW01_02560 0.43 -0.4
511,664 + CSW01_02560 0.47 -0.9
511,708 + CSW01_02560 0.52 -1.0
511,708 + CSW01_02560 0.52 -2.2
511,708 + CSW01_02560 0.52 -0.6
511,708 + CSW01_02560 0.52 +0.1
511,716 - CSW01_02560 0.53 -1.1
511,716 - CSW01_02560 0.53 -0.9
511,736 + CSW01_02560 0.55 -0.8
511,796 - CSW01_02560 0.62 +0.5
511,796 - CSW01_02560 0.62 +1.4
511,833 - CSW01_02560 0.66 +0.8
511,875 + CSW01_02560 0.70 -0.7
511,903 - CSW01_02560 0.73 +0.6
511,903 - CSW01_02560 0.73 -0.1
511,935 + CSW01_02560 0.77 +0.2
511,943 - CSW01_02560 0.78 -0.5
511,954 + CSW01_02560 0.79 +1.6
511,968 - CSW01_02560 0.81 -2.8
512,001 + CSW01_02560 0.84 +0.7
512,009 - CSW01_02560 0.85 +0.7
512,009 - CSW01_02560 0.85 +0.0
512,069 + +1.0

Or see this region's nucleotide sequence