Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02450

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02435 and CSW01_02440 are separated by 45 nucleotidesCSW01_02440 and CSW01_02445 overlap by 1 nucleotidesCSW01_02445 and CSW01_02450 are separated by 53 nucleotidesCSW01_02450 and CSW01_02455 are separated by 52 nucleotidesCSW01_02455 and CSW01_02460 are separated by 25 nucleotides CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482 _02435 CSW01_02440: CSW01_02440 - YggU family protein, at 487,528 to 487,818 _02440 CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375 _02445 CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247 _02450 CSW01_02455: CSW01_02455 - YggS family pyridoxal phosphate enzyme, at 489,300 to 490,010 _02455 CSW01_02460: CSW01_02460 - type IV pili twitching motility protein PilT, at 490,036 to 491,073 _02460 Position (kb) 488 489 490Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 487.441 kb on + strandat 487.620 kb on + strand, within CSW01_02440at 487.628 kb on - strand, within CSW01_02440at 487.636 kb on - strand, within CSW01_02440at 487.640 kb on + strand, within CSW01_02440at 487.719 kb on - strand, within CSW01_02440at 487.732 kb on - strand, within CSW01_02440at 487.769 kb on + strand, within CSW01_02440at 487.782 kb on + strand, within CSW01_02440at 487.796 kb on + strandat 487.797 kb on - strandat 487.797 kb on - strandat 487.801 kb on + strandat 487.824 kb on - strandat 487.832 kb on + strandat 487.837 kb on + strandat 487.837 kb on + strandat 487.845 kb on - strandat 487.887 kb on - strand, within CSW01_02445at 487.887 kb on - strand, within CSW01_02445at 487.898 kb on - strand, within CSW01_02445at 487.904 kb on + strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 488.008 kb on - strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.067 kb on - strand, within CSW01_02445at 488.093 kb on + strand, within CSW01_02445at 488.098 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.141 kb on - strand, within CSW01_02445at 488.197 kb on - strand, within CSW01_02445at 488.210 kb on + strand, within CSW01_02445at 488.218 kb on - strand, within CSW01_02445at 488.227 kb on + strand, within CSW01_02445at 488.324 kb on + strandat 488.324 kb on + strandat 488.332 kb on - strandat 488.506 kb on - strandat 488.509 kb on + strandat 488.516 kb on + strand, within CSW01_02450at 488.584 kb on + strand, within CSW01_02450at 488.592 kb on - strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.603 kb on - strand, within CSW01_02450at 488.663 kb on + strand, within CSW01_02450at 488.755 kb on - strand, within CSW01_02450at 488.777 kb on + strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.808 kb on - strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.860 kb on + strand, within CSW01_02450at 488.860 kb on + strand, within CSW01_02450at 488.904 kb on + strand, within CSW01_02450at 488.904 kb on + strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.026 kb on - strand, within CSW01_02450at 489.076 kb on + strand, within CSW01_02450at 489.244 kb on - strandat 489.348 kb on - strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.361 kb on - strandat 489.361 kb on - strandat 489.420 kb on - strand, within CSW01_02455at 489.482 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.536 kb on + strand, within CSW01_02455at 489.544 kb on - strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.660 kb on + strand, within CSW01_02455at 489.695 kb on + strand, within CSW01_02455at 489.752 kb on + strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.821 kb on - strand, within CSW01_02455at 489.826 kb on + strand, within CSW01_02455at 489.835 kb on + strand, within CSW01_02455at 489.855 kb on + strand, within CSW01_02455at 489.926 kb on - strand, within CSW01_02455at 489.948 kb on + strandat 489.969 kb on - strandat 489.971 kb on + strandat 490.003 kb on - strandat 490.064 kb on + strandat 490.072 kb on - strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.135 kb on + strandat 490.135 kb on + strandat 490.179 kb on - strand, within CSW01_02460at 490.210 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.220 kb on - strand, within CSW01_02460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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487,441 + +5.2
487,620 + CSW01_02440 0.32 -0.5
487,628 - CSW01_02440 0.34 +0.4
487,636 - CSW01_02440 0.37 +2.0
487,640 + CSW01_02440 0.38 -1.1
487,719 - CSW01_02440 0.66 -1.5
487,732 - CSW01_02440 0.70 -2.6
487,769 + CSW01_02440 0.83 -1.6
487,782 + CSW01_02440 0.87 +0.6
487,796 + -3.4
487,797 - +0.9
487,797 - -0.8
487,801 + +0.2
487,824 - +0.6
487,832 + +2.2
487,837 + +0.6
487,837 + -0.8
487,845 - +1.0
487,887 - CSW01_02445 0.12 +0.3
487,887 - CSW01_02445 0.12 -0.7
487,898 - CSW01_02445 0.14 -3.3
487,904 + CSW01_02445 0.15 +0.6
487,912 - CSW01_02445 0.17 -2.3
487,912 - CSW01_02445 0.17 -2.3
487,912 - CSW01_02445 0.17 -1.6
487,912 - CSW01_02445 0.17 -1.5
488,008 - CSW01_02445 0.34 +0.3
488,010 + CSW01_02445 0.34 +0.7
488,010 + CSW01_02445 0.34 -2.4
488,059 + CSW01_02445 0.43 -3.0
488,059 + CSW01_02445 0.43 +1.1
488,067 - CSW01_02445 0.45 -0.5
488,093 + CSW01_02445 0.49 +2.4
488,098 + CSW01_02445 0.50 -1.7
488,108 + CSW01_02445 0.52 -1.0
488,108 + CSW01_02445 0.52 -0.6
488,111 - CSW01_02445 0.53 +0.4
488,111 - CSW01_02445 0.53 +0.9
488,141 - CSW01_02445 0.58 -2.4
488,197 - CSW01_02445 0.68 -0.9
488,210 + CSW01_02445 0.70 -0.4
488,218 - CSW01_02445 0.72 +1.8
488,227 + CSW01_02445 0.73 -3.1
488,324 + -1.7
488,324 + +1.0
488,332 - +0.3
488,506 - -1.6
488,509 + -2.6
488,516 + CSW01_02450 0.11 -0.6
488,584 + CSW01_02450 0.19 -3.1
488,592 - CSW01_02450 0.20 -0.5
488,595 + CSW01_02450 0.20 -1.0
488,595 + CSW01_02450 0.20 -2.6
488,603 - CSW01_02450 0.21 +0.2
488,663 + CSW01_02450 0.29 -2.2
488,755 - CSW01_02450 0.40 -3.6
488,777 + CSW01_02450 0.42 -4.1
488,777 - CSW01_02450 0.42 -1.6
488,777 - CSW01_02450 0.42 -1.1
488,808 - CSW01_02450 0.46 -3.5
488,813 + CSW01_02450 0.47 -1.5
488,813 + CSW01_02450 0.47 -3.2
488,821 - CSW01_02450 0.48 -2.4
488,821 - CSW01_02450 0.48 +0.9
488,821 - CSW01_02450 0.48 -3.7
488,860 + CSW01_02450 0.53 -1.9
488,860 + CSW01_02450 0.53 -1.5
488,904 + CSW01_02450 0.58 -4.2
488,904 + CSW01_02450 0.58 -1.1
489,011 - CSW01_02450 0.71 +0.2
489,011 - CSW01_02450 0.71 -3.6
489,011 - CSW01_02450 0.71 -1.0
489,026 - CSW01_02450 0.73 -1.3
489,076 + CSW01_02450 0.79 -1.1
489,244 - +0.4
489,348 - +0.6
489,353 + -2.2
489,353 + -1.3
489,353 + +0.9
489,361 - -2.0
489,361 - -0.6
489,420 - CSW01_02455 0.17 -1.3
489,482 + CSW01_02455 0.26 -4.1
489,487 + CSW01_02455 0.26 -0.9
489,487 + CSW01_02455 0.26 -1.7
489,487 + CSW01_02455 0.26 -0.4
489,495 - CSW01_02455 0.27 -2.1
489,495 - CSW01_02455 0.27 -4.8
489,536 + CSW01_02455 0.33 -2.5
489,544 - CSW01_02455 0.34 -0.6
489,616 + CSW01_02455 0.44 -3.6
489,616 + CSW01_02455 0.44 -1.4
489,660 + CSW01_02455 0.51 +0.4
489,695 + CSW01_02455 0.56 -2.4
489,752 + CSW01_02455 0.64 +0.4
489,782 - CSW01_02455 0.68 -3.1
489,782 - CSW01_02455 0.68 -1.5
489,782 - CSW01_02455 0.68 +0.1
489,821 - CSW01_02455 0.73 -2.3
489,826 + CSW01_02455 0.74 +0.5
489,835 + CSW01_02455 0.75 -2.7
489,855 + CSW01_02455 0.78 +0.7
489,926 - CSW01_02455 0.88 +1.3
489,948 + +0.7
489,969 - -2.0
489,971 + +1.1
490,003 - -0.5
490,064 + -1.2
490,072 - +0.8
490,084 + -2.5
490,084 + -3.1
490,084 + -1.1
490,084 + +0.9
490,135 + -0.1
490,135 + -0.1
490,179 - CSW01_02460 0.14 +0.8
490,210 - CSW01_02460 0.17 +1.0
490,215 - CSW01_02460 0.17 -3.9
490,215 - CSW01_02460 0.17 -1.3
490,220 - CSW01_02460 0.18 +0.2

Or see this region's nucleotide sequence